RNA id: TU48909


Basic Information

Item Value
RNA id TU48909
length 1627
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id G36485
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 7357751 ~ 7359732 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAAGACAAAAGTCAAGAAGCACTCATCTAGCAAAAATCTAGCTTTGTTTATTAGCAAAGCACAGTGAGAGCCAGCTGCTCTCTGGAATGTTGTTCTAATGCAGTTACAGCAGCCAAATGTGTTTAAATAACCAAAACGGCACTTGCACAATGCATTTTCACTCATACTACAGCAGATATTATCCAGTTTTAACCACCTCGgcaaattattttcattaaacTGGCATGGTCAAAAGAATATTGCACCATGTCTTTGGTTAAAAATAGAATTTCTGTCAATTACAATTCTGTTAACATACACGAAAAAGAGCTTTGACATGGACGGGACACTGAATGAAAGGGACACAAGTGGGCACTGCAGACAAGACAAATAGAAGAAAGCTAGAATTCTACTGCATGAGCCAAAACCATTTATTTGAAACAGAGGATCCTCAAGAAACCTTCCAATAGCTCTTCCCCGCTCCATCCCCTGAAATCCCTGGAGACAAACTAGTGTACACATCTGGCTCTTGGCCATGTGCCCATGCCCGCACTTTCAACAAGCAGTCTGGGGTTTGGTTCTTGCTTACAGTCTTTGTGTACCCTCTGCGTGCTGTGAGCGCCAGACCCCTGAGTCATGTTGGTGACGTCCGCTAGCTCTCGCCTCTGGGACAAGGTGGTCACCATCCGCTCCAGCTTGGAGCGGATGGTGGAGTAGTGGTGCTGGCGCTCTTTGGTCAGCTTGTGTAAGGAGTCCTTTAAGGTGCCGTGTGGAGCTGCCTGGGTGGGCGAGCTCTGCCCGGGAGACGGAAAGGAGGGAGAGGTGGCCTGGTTTGGCCCTGTGCTCGTTGGTGTGATAAGGTTGGGGTCTGGTGTGAGCTGGAGGTCAGTCTGGGTGTCACTGTCCATAAATGACTGGCTGGTCTGAGTGGAGGCGTGGCATGAGACGGGGCTGGGGGTCGCTGGCTCTTTCTCCGCTATCTGATTTGCAGGGAAGCACTGAGTGGTGCTACCGGCCAGGATCTCCTCCTGCATGTGCTGCTGCTCGGTCCACTCCTCACCTACGGTGGAGGAGTCGGACACCGTGTTGGTTTTACGACCATCTGGAGTCGATGGTTCACGCGACGGCTGGACAGCTGAGTTTAAGGGGTTGCGGCTGGGCGTGCTGGTCAGACACACTGGCCTCTCTCTGGCCAGTTGAGGGGAGGAGGTGAAGGAGTGTTTGATGAGGAGATGCTCGTAGATGCTGCTGTTTCGGACACTTGGAGGTCCTCGAACGTTTATAGGTAGAGACTGGGCGTAGAGGATGCGGAACTCCTCGTCAAATCTCTCCGTTATCTGACCAGAAAGCTCGATTAGGTTGCTGCTGTTTAGTTTGCCATCAGTCCAGTTGTACCTGCACAGAAATGGGATTTAACAACATGCGTGAATGAAAAGCCACGCCCAGCTTTACAGGCCCACCACATACCCGAAGGTCATCCAGGCAAACACCGACATTTCTGCACATCTTGAGGAAAGCAGGAGCACATGATTGGTCCAGCAGGATGTAGACAGGGACTTTGCGGTGGGAGCATGCCTCCTGAAGATCCTTAAAGATATCCAGGTCGGTCAGGGAGTCTGTAACTATGGCAATCACCTGCAGTGGAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638960.1 lncRNA upstream 27123 7329295 ~ 7330628 (+) True LOC120557355
TU48876 lncRNA upstream 51440 7295386 ~ 7306311 (+) False hcfc1a
TU48885 lncRNA upstream 83872 7273081 ~ 7273879 (+) True G36470
TU48884 lncRNA upstream 84951 7272454 ~ 7272800 (+) True G36469
TU48858 lncRNA upstream 89081 7259016 ~ 7268670 (+) False G36458
TU48980 lncRNA downstream 18963 7378695 ~ 7454262 (+) True G36529
TU49021 lncRNA downstream 116402 7476134 ~ 7479379 (+) False G36563
TU49022 lncRNA downstream 116402 7476134 ~ 7478252 (+) True G36563
TU49029 lncRNA downstream 128164 7487896 ~ 7518266 (+) True G36568
TU49073 lncRNA downstream 161448 7521180 ~ 7525963 (+) True G36604
XM_039797604.1 mRNA upstream 20439 7335466 ~ 7337312 (+) True mafbb
XM_039797600.1 mRNA upstream 40669 7312734 ~ 7317082 (+) True gata1a
XM_039797595.1 mRNA upstream 51408 7288907 ~ 7306343 (+) True hcfc1a
XM_039797596.1 mRNA upstream 51408 7288907 ~ 7306343 (+) False hcfc1a
XM_039797955.1 mRNA upstream 172112 7183199 ~ 7185639 (+) False si:dkey-245f22.3
XM_039797261.1 mRNA downstream 2208 7361940 ~ 7377650 (+) False si:ch211-232b12.5
XM_039797260.1 mRNA downstream 4463 7364195 ~ 7377650 (+) False si:ch211-232b12.5
XM_039797259.1 mRNA downstream 4493 7364225 ~ 7377650 (+) True si:ch211-232b12.5
XM_039797258.1 mRNA downstream 4493 7364225 ~ 7377650 (+) False si:ch211-232b12.5
XM_039799119.1 mRNA downstream 53057 7412789 ~ 7416280 (+) True snai1a
TU48863 other upstream 98801 7242209 ~ 7258950 (+) False G36458
TU48651 other upstream 719364 6635302 ~ 6638387 (+) False setmar
TU48489 other upstream 1304982 6035100 ~ 6052769 (+) False rybpb
TU48469 other upstream 1433351 5920924 ~ 5924400 (+) True G36156
XR_005638978.1 other upstream 2423587 4911700 ~ 4934164 (+) False cdk5rap1
TU49260 other downstream 868030 8227762 ~ 8228720 (+) True G36744
unassigned_transcript_183 other downstream 1257266 8616998 ~ 8617069 (+) True trnae-cuc_4
unassigned_transcript_186 other downstream 1282298 8642030 ~ 8642101 (+) True trnae-cuc_5
unassigned_transcript_189 other downstream 1351277 8711009 ~ 8711080 (+) True trnae-cuc_6
unassigned_transcript_190 other downstream 1379235 8738967 ~ 8739038 (+) True trnae-cuc_7

Expression Profile