RNA id: TU48980


Basic Information

Item Value
RNA id TU48980
length 663
lncRNA type read_through
GC content 0.34
exon number 2
gene id G36529
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 7378695 ~ 7454262 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

acctACAATGAGCATAAAACTAAAGAAAACATGATCAAAAGGCTATGACAAAAAGGTAAAACAGGAATAGGATGTTGACTTTACAGCTACTTACAATTTTCCTATCATAAAAGTGGAATAAAATGAACTGAATTCACATTAAATGTTACATTATTTTATCCTCaatctttacataattaaaaaaaactgtctaaAATTGTAACAGATTGGTGATTTTTTTGGGCAAAGTTGATATCCCTCACATATCCTTCGGGGAAGAAAAACACTTTCATTTCAATGACTTTAAATACATCATAGCATTATCTTCAAGTAACAgaagggagttttttttttttgagacaattattaaattaagttaaaaatCGATGTAGACAGAGCTACGCAGAAAGATTCAGAGGATGCTTACGACTTAAAGGATAAAAATGATTGGTTCACATTTACACTGAAAAGAAGTCCCTGATGGAGgctgtaaaacaaaatattcacattctGCTTGCTTGCTTAAGTAAATATTGACATGGTTGCAGTATTTTCCCCCCTTTGCCTGCCCAGACAGTCTTTCATGCTAAACAATTCAACATAGtccagtttaaaatattcacccaAACAATTTCATGGCCAAGCCccgtcacacacacacacacacacacacacacacacacg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48909 lncRNA upstream 18963 7357751 ~ 7359732 (+) True G36485
XR_005638960.1 lncRNA upstream 48067 7329295 ~ 7330628 (+) True LOC120557355
TU48876 lncRNA upstream 72384 7295386 ~ 7306311 (+) False hcfc1a
TU48885 lncRNA upstream 104816 7273081 ~ 7273879 (+) True G36470
TU48884 lncRNA upstream 105895 7272454 ~ 7272800 (+) True G36469
TU49021 lncRNA downstream 21872 7476134 ~ 7479379 (+) False G36563
TU49022 lncRNA downstream 21872 7476134 ~ 7478252 (+) True G36563
TU49029 lncRNA downstream 33634 7487896 ~ 7518266 (+) True G36568
TU49073 lncRNA downstream 66918 7521180 ~ 7525963 (+) True G36604
TU49078 lncRNA downstream 77455 7531717 ~ 7532203 (+) True G36609
XM_039797261.1 mRNA upstream 1045 7361940 ~ 7377650 (+) False si:ch211-232b12.5
XM_039797260.1 mRNA upstream 1045 7364195 ~ 7377650 (+) False si:ch211-232b12.5
XM_039797259.1 mRNA upstream 1045 7364225 ~ 7377650 (+) True si:ch211-232b12.5
XM_039797258.1 mRNA upstream 1045 7364225 ~ 7377650 (+) False si:ch211-232b12.5
XM_039797604.1 mRNA upstream 41383 7335466 ~ 7337312 (+) True mafbb
XM_039797580.1 mRNA downstream 255704 7709966 ~ 7727318 (+) False zmynd8
XM_039797578.1 mRNA downstream 255704 7709966 ~ 7727318 (+) False zmynd8
XM_039797582.1 mRNA downstream 255704 7709966 ~ 7727318 (+) False zmynd8
XM_039797587.1 mRNA downstream 255704 7709966 ~ 7726632 (+) False zmynd8
XM_039797581.1 mRNA downstream 255705 7709967 ~ 7727318 (+) False zmynd8
TU48863 other upstream 119745 7242209 ~ 7258950 (+) False G36458
TU48651 other upstream 740308 6635302 ~ 6638387 (+) False setmar
TU48489 other upstream 1325926 6035100 ~ 6052769 (+) False rybpb
TU48469 other upstream 1454295 5920924 ~ 5924400 (+) True G36156
XR_005638978.1 other upstream 2444531 4911700 ~ 4934164 (+) False cdk5rap1
TU49260 other downstream 773500 8227762 ~ 8228720 (+) True G36744
unassigned_transcript_183 other downstream 1162736 8616998 ~ 8617069 (+) True trnae-cuc_4
unassigned_transcript_186 other downstream 1187768 8642030 ~ 8642101 (+) True trnae-cuc_5
unassigned_transcript_189 other downstream 1256747 8711009 ~ 8711080 (+) True trnae-cuc_6
unassigned_transcript_190 other downstream 1284705 8738967 ~ 8739038 (+) True trnae-cuc_7

Expression Profile