RNA id: XM_039797258.1


Basic Information

Item Value
RNA id XM_039797258.1
length 4664
RNA type mRNA
GC content 0.48
exon number 3
gene id si:ch211-232b12.5
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 7361940 ~ 7377650 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACTCGCTATAATTTTTTTGGAGCTGCCTCGTCCTGCACCGCCGACCATAGTTGTTTTGCCGTCTCCATGCAGTGTGGCTGAGGGGTGGAAaggtaatgtaatgtaatgtacctTGCCGTGGTCACTGACGGGTTCACGCCAGTTCACCGGGTTCACTTGAGGAGAGCTCCCACCCCCTGCTcgcctcctcttcttctcaAAACGCAACGATCGGAGCTAATCCAAtattattcatttatatattaatgTCGGATTCCATTTTTCCCACCGACTGTTGAGGTTCCCTGGGAGCTGTTGAACTTGTCCATGTGACAGGAGTCCTGAAGTGGCAGAGGGCATGAAGAAACACTGTGATCTCATAGTGGCTGGTCCATGACACTAAACTCCATTCAACCCTCTCCACTCTCCACCCACCCTCTGTTCTCATCATACCGGACAAGCAATCACTCACACCATTTACACAAAGCTGCACAATGGCCAGCAAGAGGAAATCCACTGTACCCTGCATGATACCATCCAAATCCAAACATGTGCGTGAGGAAATCATACTGGGCTCGCTACCAGAACTCCTACCAACGATCCCAGAAGACAGCATACTCAGCATCTCTGGAGAAGAGTCTGGCCATTTCTCTCACAGCTCCTTCAAATCCAAAAGTGGCAGCGAGATGCAGAAAGGAGGTACATACAGCTGCCCAAAGTGCCGTTTCGAGTCCAGAGATCTAAACTACTTTTTGGATCACATGCACAACTGCCACTTAGACTTCAGGGCCCAGCCCACTTTCTACTGCCTGAACTGTGGGGTATCAGTCGTCCGCTTTGAGGCTCTGGCTCTGCATAACGCTACCGCCCACCCTAAAATAATGGAGGGCTTGGTCACTGCCTCCCTAACTGTCAACAAGAGGGATGGAGTGACAACAGTGGAGCAAAGTCTCTTCACAGACAGCGCAGAAGACAACAGAGAATCTGGGATCTCCCTCACCAAAACACCGATTGCAAAGATGATGAAAGCCAAGGGGGAGCACAAAAAAATTGTGGTTTCTCACACCGTGGAGGTACGGAAGATAAACACTGGAAAGGATGTAGATCCCAGCATGCTGACAAATGTGCCTGAACTCCAAAACGGGGCTCTCAGTCTTTCTGGCGCCCCAGCTATGCCGAGGACCACTGTCGCTCATGTGACTAAGACGACAGTGTCCAACCAAGTCTTTCACCAGCACACTCCCTCCCTTTACTCTCCCCCCTTCTCTGCTTCCAATAAAGACCTTCCAAAGGTGATGATCCCTCTCAGCAGCATCCCCACCTACGATGCCGCCATGGACACCAGCAGCTTTCTCAAGACGTCCTTTGGCAAGTTCCCCTACCCGACCAAAGCCGAACTCTGCTACCTGACGGTGGTCTCAGAGTTCCCCGAAGAGCAGATCAAACTGTGGTTTACTGCCCAAAGGCTCAAGCAGGGCATAAGCTGGTCTCCTGAAGAGATCGAAGAGGCCAGGAGAAAGATGTTCAACACAGTGTTCCAGGGTGGAGCACCTCAAAAGCAACCCACTACACCACGGCACATTAATCACATTGTAACCCATCACACTGTCACTGCCCATCAAGGCTCAAAAGGACCAAACTTTCAGATGGCCAAAGTTCCCTACAACAATATGAAAACCAGGCCTGTCGGAGTCATGGCCACACAGGCAAGCATGTCAACCAACCCCCATGTCACTAGGGTCTCGTATTCTACTCCAATTGTCCCCCCAACGTTCCCATCTGTAGTCAGAACAACACAGGTACTGACCAAGAATACTCAACCCACTGTGGAGCTAGACAAGAGCAATGGCCTCGGCCTGGACATGGCTGGAAGCAGCGGTTGCGCCAGTAGCACCAGCAGCAGTCgaagcagcagtagcagcagtagttgcagtagtagcagcagcatcagcagctATTCCAGCAGCAGTAATGGTGTTGAGACTGTCACCCGGAAAACGGTGCATAACAGCAGCCCAACCAACAGCATTAACAGCATCACCACTTGCTCTACCAACATTAGCAATAATGATGAGCGCTGTGTTGCCGACACCAACGGGAAAACATACGTCCAAAGCAACAGTTCACCAATCGGATTGGAAGGTTCAAACAGTACCAAGAGTCAAGTAATCATCGATAACACCAGCAAATCCAACATCACCTGCAACAATCATAACAGCAGCATCGTCAGTCCACAAGAGCAGGCCCACGCCGCGAATCCTGACGATGAACACAAAAACTACATCCACAAGACCAACAACAGCAGTATTAGCAATGAATACCCCAGTACTACCTGTAATGACAGTGTCCCTAACCTGAACCATGCCAGCAAACCCCCAACTGAAAGCACCAGCAATACTGTCATTACAAAAAGCAGCTCATCTATTTTAGATGAGGGTAAATGCAACAAGGACTTTCCCATAAAAGGCATGTCAATCTTACAGCAACTCATCAAGGAGGAGGACCCGTTTGCTAGAGACAGAAGCTGCCCAGAGCGGAAAATTGACCCCATCAAGATCAACTTCAAAAGGCTTAAGATGAATGAACCAGATACTACATCTGAGATTGTACACCAAGATCATAAGTCTGATACAGCTGAGGATTCTGCTTCTCAGCCGTCTTTCTCCCCCCCCTGGGCCAACAAGACCCCCCAGCAGCTGCACATCCTCCGACAGATTTTCTCCAACACCCGCTGGCCCAGCAGTCAGCAGTACGAGGACTTAAGCGTCCAGACAGGCCTTCCCAAGTCAGAGGTGGTGCGCTGGTTCAGCGACAGCCGGTACAGCCACAAGAACGGGCAGCTGAAGTGGCTGGAGACCTATCAACGACCGCCCGCAGTAACAGTGGAAGTGAGGAGCCACGGAGATGCTGAAGCCGAGTCTCCAAAGGACTCTCCAGTGGCCAAAAAGAAACTTGTTGAGAAAGACACAAACAAGCACCTTGAAGGAGATGCAGGACTAAACTCAGGGCAGCGGGTTGTGTGGCAGGATTCATACTCTCCGCTGCTTGGTCTGATGGCGTCTGAGGGGAGCATTGAGCGAGCCCGAGCTGAAGAGTCGGCGCAGCCGAGAGACCTGCAGGATCCCTGGTCAGAGAGAGCAGAAGACCACCAGCAGCCAGTGGCCAGTCAGTCACTCATTGAAAAACAGACGGATGCCAATCAGGCCAGGGATCGCCTGAGGATGGAGCTGCTGGAGGTGTGATGAAGCAGGCCCAATCGCGCCAGAGGAGCATGATGTTTAAAGGCTGGCTTGCTCCCCTGGCCGTGGTCTAACAAGAGTGTTCATAATGACAGCAGATGTGATTGTAGCTGGACCGTTGGACTCTGACTGTAACTGTGAataccccccacccctcctcctcctcttccatctGCCATCACTTCCTGCCATCGTCAAAAGAAAGAACTTCTCACCTTTGAGTCCTGTGATGTTTAAGCATTTCATGCTTCTTTGTGGTTGTGTGGGGAGGGTGCACAATGAGGTCAGTACGAGGGatcaaagaaagagaaaagacgCACACTGACTGGAAAACTGACTTGAATGAGCAAAGATAGGATAGGATAGGGCTGAGAGATATTGTTTTGGGGTCAGAgggagaaatatatatatatatgattgaAACTGCACTAAAGAGGGTTTGTACTGACTGGACAAACAAAAGACGTGTCAAGGAAATCTTATTGTTGGCTTTGtgatattttttacttttttagcaACCAGTACTTCAGCACTGCCTTGAATTTTACTTTTTCCgttatttgttttttcaattCTATTTACTCTTCTATAGTCACTGTAAGTCCAGATGCAATCAAACATGGTTTATTTAGATCTGTATAAATGTTGGTGATCACTTTGCAGTTCAGCTACCGCAAGAGACTATATACAATGCACTAATGAAGACAGCAATGCTACAAATCCCACTGCCCCACAGTAAAGGTATTGACAGCTCCGTCAAGATCAATACACTACACTGCCCTGCAAACTGAACAGAGAGAAGCCTGTCACGCTAATGTTGCCTTACTCAGCTCTGTCCATGTTTATATGACCTGTCTGTCCATCACCTTGCTTTCCAGCTACCGTGCTGtcctgaaaaaaagaagaaaaaaaaaatacatgccaGTGCATCAATGGTCACTGTTCGTCTatatctgtgaaaaaaaatcttgtgCTGCTTTCTGTACACTTGGAGATGTTTAACTTTAAGCTGTCATTATATCTAATATTGTTACTGGCGAAATGTTGTTTAAAGCTAAATTATCAATTTGATCCCTAGACACTGACAGAGTGAGATATTGTGCTAGCTagagagccaaatgaggagatCTTTGCTCTCCTCTGAATTTTCTTGTGTTTATATAAACATACAGTCACTACATGAATCCTATTAAGCTGCATCTTTGTCAAGCTGCTAATAGCTATGAACGGTGCTATACCATCCAAAGTGAAATTGGAGGTTGATCTCCTACCAGCAGTGTATGCACTTGTGTCGAATGTTACAAATTTATTTTGGTTTGAGATAGTGGAATCTGGACTTACGGTGTTATGATCACTTTTATGAAATAGTCTGATCATAAAGCACTGTTGTATCATCCTTTCTACACTTCTGAATCTTTACAGAATAAACTGAATACTCACCAAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48909 lncRNA upstream 4493 7357751 ~ 7359732 (+) True G36485
XR_005638960.1 lncRNA upstream 33597 7329295 ~ 7330628 (+) True LOC120557355
TU48876 lncRNA upstream 57914 7295386 ~ 7306311 (+) False hcfc1a
TU48885 lncRNA upstream 90346 7273081 ~ 7273879 (+) True G36470
TU48884 lncRNA upstream 91425 7272454 ~ 7272800 (+) True G36469
TU48980 lncRNA downstream 1045 7378695 ~ 7454262 (+) True G36529
TU49021 lncRNA downstream 98484 7476134 ~ 7479379 (+) False G36563
TU49022 lncRNA downstream 98484 7476134 ~ 7478252 (+) True G36563
TU49029 lncRNA downstream 110246 7487896 ~ 7518266 (+) True G36568
TU49073 lncRNA downstream 143530 7521180 ~ 7525963 (+) True G36604
XM_039797604.1 mRNA upstream 26913 7335466 ~ 7337312 (+) True mafbb
XM_039797600.1 mRNA upstream 47143 7312734 ~ 7317082 (+) True gata1a
XM_039797595.1 mRNA upstream 57882 7288907 ~ 7306343 (+) True hcfc1a
XM_039797596.1 mRNA upstream 57882 7288907 ~ 7306343 (+) False hcfc1a
XM_039797957.1 mRNA upstream 178586 7183199 ~ 7185639 (+) False si:dkey-245f22.3
XM_039799119.1 mRNA downstream 35139 7412789 ~ 7416280 (+) True snai1a
XM_039799188.1 mRNA downstream 56560 7434210 ~ 7449018 (+) True myh7ba
XM_039799192.1 mRNA downstream 56560 7434210 ~ 7446720 (+) False myh7ba
XM_039799189.1 mRNA downstream 56968 7434618 ~ 7449018 (+) False myh7ba
XM_039799190.1 mRNA downstream 58224 7435874 ~ 7449018 (+) False myh7ba
TU48863 other upstream 105275 7242209 ~ 7258950 (+) False G36458
TU48651 other upstream 725838 6635302 ~ 6638387 (+) False setmar
TU48489 other upstream 1311456 6035100 ~ 6052769 (+) False rybpb
TU48469 other upstream 1439825 5920924 ~ 5924400 (+) True G36156
XR_005638978.1 other upstream 2430061 4911700 ~ 4934164 (+) False cdk5rap1
TU49260 other downstream 850112 8227762 ~ 8228720 (+) True G36744
unassigned_transcript_183 other downstream 1239348 8616998 ~ 8617069 (+) True trnae-cuc_4
unassigned_transcript_186 other downstream 1264380 8642030 ~ 8642101 (+) True trnae-cuc_5
unassigned_transcript_189 other downstream 1333359 8711009 ~ 8711080 (+) True trnae-cuc_6
unassigned_transcript_190 other downstream 1361317 8738967 ~ 8739038 (+) True trnae-cuc_7

Expression Profile