RNA id: TU48469


Basic Information

Item Value
RNA id TU48469
length 2081
RNA type TUCP
GC content 0.47
exon number 4
gene id G36156
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 5920924 ~ 5924400 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttatTGCTGTTTCTGAATACCGCACTGAAAGCAAAAGCATTCAGAGTATACACAGAAATTATACAATTATATATGGTTTCACAAAGGCagtgaacacatactgtattacaATCTACAAAAATCTACTTTACAGAAATTTAAAATTCTAAATATCAAAAAGTACAGCTGCAGAAACAGGTGTAGAACTGGAACCAGAAACTGCTCTGGATATCGGTCGGTAAAACAACATGGTGACATCACGatacaaagaaagcagaagtcATCTTTGTACTTACAGCTGGTTTTACAACTggcagacaaaacaaaaacatactcCAAAATAACTAACTGAATTGAAATGATCATATAAATTATGGTGGTTTTATGAAtccaaaatatataattttacaGAAGACACCTCAACAAGGTAGAATGTCATTGTACTGTTAGTGGGATTGGTAGTGTATCATTGCAAAAATATGGTTAAAATAATATAAGGAcacaatggaagaaaaaaaaagaaaaatgtctacCATCTCATAAGGATggagaaatacattttaaaacaatgcATGTTCTCAACAGCCTGGTGGAACTTGGTGGAGTAACAATATAGTGGTGGTGGGCTGTTCCCTTCAGGTCATTGCTTGACTaatagaatatgttttacataaATGGTGGTGGTAGCTCATATCCTGAAAAACAACGTCATAAGTAAACAGGGGCTGGTATGGCTCTGTTCTGACCCTGGTGGTGTGGTACACTGGGCTTTAAGGGTACAAAACAGACTACCAATCCCGTCACAATGTCCACGAGGCTGGAGTGAGTGGTATAAGAAAAGAACCAGACCACCCCAGCATCCAACATGCCCGTTGAacaccaaagaagaagaaaaataaaagaatccAGCTAAGAAACTCAAGGCTGCTGAAACCAACCTCTTTCATGGGAAAATTAAAAACAAGAGGATAAGAAGCTCAATAAAATATtccagtttaaaaaagaaaagaagaagaaaaaaaaagaaatcgtcaaatgaaaatgtataagCCCACATCAATGCCAGGTAGCCATTTTGGAGGAGTGTCCAAAAGCGGGACGAGGGTTCGTCTTGTGTACGAGGTGCAGTTCTCTTCATTCCCAGTGACAGTCAAGCTGGATTCAAGGATAAGCTGGTTTATGGTCACACATGGCTGCAGGGGGGCCTTCAATCTAGTCCTGCTCCATGGGCTCCTCGGTGGACCCAGTGTTCAAGATGGCGCTTTCCATGTCGCCCTCTGTAGGAGGTTCGGTTGTACTGCTGGAGGGAGCGAGCGCTACGTCTTCTCTGGCCGCGTCAGCACTCTCCTCTATGCTACAGCTGCTAccgctgctactgctactgctgctgacTGGGTCACTGTTGCTCTCCTCGCTGTCCCTGCTGGTCTCGGGGCTCTCCAGGACGCCTGCGGGCGCCTGCTGCTCCGATTGATCCATGTCACTGCCCTCCTCCTGGGAGCCGCAGGGCACCTCCCGCTCAGCCTGCTCGGCCTCTGGACCTGAGCCCGTGCACACCTCGGCCTGCGTGCTGCTCGTGGGTTCTTGgtcctcagcagcagcagcactgctgGAGGCTTCGTTCTCCTTGCTGTACCCgaccttctcctcttcctcttcctcctggaCCATGGCTTCTGCCTCTTTTGAGAGGCAGGTGGCATGTAAAGGCCTCATAGTGTCCgcctcctgctcttcctcttcatcctcctcatcatctTCTTCGTCCTCGTCCTTGCTGAACTTAAGTCGCTTCACTTCCTGCTGCTCGGCTTCCATGTCCTCTTCTGCGTCTTCTGGGTGTTTGTTCTTCACTGAGCTCCCCAGAGAAGCTCCCGACGCTGAAACCTCACTGGAGTCCTTGTCGTCTTCTTGCTCTGTGTTGAGGTCTTTGTCGTCTGTGCTGTCTGGCAGGCCGTTGGCTGCTGGGGAGTTGGCCAGAGACACCTTCGGTCGGTTCAGCGGCCGGGGAGTACCAGGACCGTTCACTTTCCTCTCTGTAAAAGCAGATGTGTTCCCAGGAAGCATCACTCCATTCATTCTGTTGACAGCACTGCATCCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48455 lncRNA upstream 225978 5694393 ~ 5694946 (+) True G36145
TU48400 lncRNA upstream 480315 5438157 ~ 5440609 (+) True G36114
TU48385 lncRNA upstream 642242 5276453 ~ 5278682 (+) True G36106
TU48384 lncRNA upstream 686333 5234383 ~ 5234591 (+) True G36105
TU48315 lncRNA upstream 865952 5054431 ~ 5054972 (+) True G36054
TU48487 lncRNA downstream 96453 6020853 ~ 6021123 (+) True G36170
TU48492 lncRNA downstream 130844 6055244 ~ 6056226 (+) True G36175
TU48491 lncRNA downstream 182470 6106870 ~ 6107152 (+) False prok2
TU48522 lncRNA downstream 187277 6111677 ~ 6114313 (+) True G36201
TU48543 lncRNA downstream 275383 6199783 ~ 6306143 (+) False foxp1b
XM_039798002.1 mRNA upstream 15761 5793732 ~ 5905163 (+) True pdzrn3b
XM_039798003.1 mRNA upstream 15761 5793732 ~ 5905163 (+) False pdzrn3b
XM_039798004.1 mRNA upstream 15761 5877464 ~ 5905163 (+) False pdzrn3b
XM_039798207.1 mRNA upstream 255871 5610010 ~ 5665053 (+) True cntn3b
XM_039798206.1 mRNA upstream 255871 5616755 ~ 5665053 (+) False cntn3b
XM_039797502.1 mRNA downstream 32871 5957271 ~ 6013954 (+) True shq1
XM_039797501.1 mRNA downstream 34192 5958592 ~ 6013954 (+) False shq1
XM_039797504.1 mRNA downstream 34192 5958592 ~ 6013954 (+) False shq1
XM_039797503.1 mRNA downstream 34315 5958715 ~ 6013954 (+) False shq1
XM_039797505.1 mRNA downstream 34351 5958751 ~ 6013954 (+) False shq1
XR_005638977.1 other upstream 986760 4911700 ~ 4934164 (+) True cdk5rap1
XR_005638978.1 other upstream 986760 4911700 ~ 4934164 (+) False cdk5rap1
TU48130 other upstream 1335449 4556704 ~ 4585475 (+) False G35921
TU48133 other upstream 1335449 4556704 ~ 4585475 (+) False G35921
TU48129 other upstream 1335449 4584239 ~ 4585475 (+) False G35921
TU48489 other downstream 110700 6035100 ~ 6052769 (+) False rybpb
TU48651 other downstream 710902 6635302 ~ 6638387 (+) False setmar
TU48863 other downstream 1317809 7242209 ~ 7258950 (+) False G36458
TU49260 other downstream 2303362 8227762 ~ 8228720 (+) True G36744
unassigned_transcript_183 other downstream 2692598 8616998 ~ 8617069 (+) True trnae-cuc_4

Expression Profile