RNA id: TU48455


Basic Information

Item Value
RNA id TU48455
length 554
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G36145
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 5694393 ~ 5694946 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgtatcacctattttgtactacaatatttaatgattgtaagaacgatgacacagtgaatgggtagcttgtgtgtgggtgatctaaagtaacgtttcaatggtatttcacaataactTTGTTTTTTGAACCATTGATTGTGTAAAtgcaagatttctttaaagatattaatgcacaatgcaatgttttgaaaattggatagcctgtgttacaagtgatgaccgttttgagttttgtgtctaaagttttgaaaaattacatcaaggttttgaaattagtagcaaagtgattgtaaaaaactgtatataCTCGTAccacattgtttgtttttttccaagatctttggctaattgcaatgtagatgagaacctgtggccaaatccacaagacagagttgatgaagatgtagaagtacagtaatcacttctttgtttagctttttacagtacaagcaagttgaggaacactgcatttgatgttttacagtactactgtcttttcttttctattttgtagctatattattttgctttgattcaaataaacctatgttgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48400 lncRNA upstream 253784 5438157 ~ 5440609 (+) True G36114
TU48385 lncRNA upstream 415711 5276453 ~ 5278682 (+) True G36106
TU48384 lncRNA upstream 459802 5234383 ~ 5234591 (+) True G36105
TU48315 lncRNA upstream 639421 5054431 ~ 5054972 (+) True G36054
TU48312 lncRNA upstream 675757 5017652 ~ 5018636 (+) True G36051
TU48487 lncRNA downstream 325907 6020853 ~ 6021123 (+) True G36170
TU48492 lncRNA downstream 360298 6055244 ~ 6056226 (+) True G36175
TU48491 lncRNA downstream 411924 6106870 ~ 6107152 (+) False prok2
TU48522 lncRNA downstream 416731 6111677 ~ 6114313 (+) True G36201
TU48543 lncRNA downstream 504837 6199783 ~ 6306143 (+) False foxp1b
XM_039798207.1 mRNA upstream 29340 5610010 ~ 5665053 (+) True cntn3b
XM_039798206.1 mRNA upstream 29340 5616755 ~ 5665053 (+) False cntn3b
XM_039796922.1 mRNA upstream 650916 4956351 ~ 5043477 (+) False LOC120556975
XM_039798002.1 mRNA downstream 98786 5793732 ~ 5905163 (+) True pdzrn3b
XM_039798003.1 mRNA downstream 98786 5793732 ~ 5905163 (+) False pdzrn3b
XM_039798004.1 mRNA downstream 182518 5877464 ~ 5905163 (+) False pdzrn3b
XM_039797502.1 mRNA downstream 262325 5957271 ~ 6013954 (+) True shq1
XM_039797501.1 mRNA downstream 263646 5958592 ~ 6013954 (+) False shq1
XR_005638977.1 other upstream 760229 4911700 ~ 4934164 (+) True cdk5rap1
XR_005638978.1 other upstream 760229 4911700 ~ 4934164 (+) False cdk5rap1
TU48130 other upstream 1108918 4556704 ~ 4585475 (+) False G35921
TU48469 other downstream 225978 5920924 ~ 5924400 (+) True G36156
TU48489 other downstream 340154 6035100 ~ 6052769 (+) False rybpb
TU48651 other downstream 940356 6635302 ~ 6638387 (+) False setmar
TU48863 other downstream 1547263 7242209 ~ 7258950 (+) False G36458
TU49260 other downstream 2532816 8227762 ~ 8228720 (+) True G36744

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU1672078 True 428 lncRNA 0.35 2 NC_048581.1 51826122 ~ 51843045 (-)