RNA id: XM_039796922.1


Basic Information

Item Value
RNA id XM_039796922.1
length 3738
RNA type mRNA
GC content 0.54
exon number 24
gene id LOC120556975
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 4956351 ~ 5043477 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGACAgtgtccctccctctttctctctccacctcctccttctctcatTAGGCTTTTCACCGGCAAAACACCGACaccgacgcacacacacactccctttcCTCCTGTAACCTGGCAATAAACACGGAGCGGCGGCTGGAACAGGATTGACCTCCCCCGGTGCGCACCATCCATGGTCCTCCCGTGGATGTCTGTCTGACAGGAGGGTTGGTGTTACTTTGCTGAAGAGACAGTGTGGCAGGCCCTGAGTCGGAGTTGAAGAGAGCAAGATAGTAGTCCTCCCAgacagcagggggcagcagcAGGCATGCAGGACTCAGCCTCGGACAGCAAGATGGCCAAACAGGAACAGAAACAGAACTCCAAGCATCTGGatgaacacacagaaacagacgaCATGTCAGAGAAGACGTCCCCAAACAAGAACCTCAAATCTCCACAGAAAGGCTCCAAACGACTTAAAACCGCCCCGTTCAAAATGACCCTGCTGGACTCCGCCGAGTTTGAAGGAGAAATTGAGAAACACTCCAAAGGACAGACCCTGATGGACATGGTGTGTGAGCACCTCAACTTGTTGGAGAAGGACTACTTTGGTCTGACCTTTGCCGACACAGACACCCAGAAGAACTGGTTGGACCCCTCCAAGGAGATCAAGAAGCAGATGCGCAATGCTCCATGGCACTTTGCCTTCTCTGTCAAGTTCTACCCTCCAGACCCCTCCCAGCTAACTGAGGATATTACCAGATACTACCTGTGTCTGCAGCTGAGGGATGACATGCTGTCAGGTCGACTGCCATGCTCGTTCGTTACTCACGCCCTCCTGGGCTCCTACACCGTTCAAGCAGAGCTGGGCGACTACGACCAGGACGACCACGGCTCCGACTACATCAGCGATTTCCGCTTCGCCCCAAATCAGACTCGCGAGCTGGAGGAGAGGGTGATGGAGCTCCATCGAAACTACAAGGGGATGACTCCAGCAGAGGCTGAAATTAACTTCTTGGAGAATGCGAAGAAACTTTCCATGTACGGGGTGGACCTCCATCACGCTAAGGATTCTGAAGGGATTGACATAATGTTGGGTGTCTGTGCCAACGGGCTGCTGATTTACCGTGATAGGCTGAGGATCAACCGCTTTGCCTGGCCAAAGATCCTTAAGATCTCCTATAAGAGGAGCAACTTCTACATCAAGATACGGCCTGGAGAGTACGAGCAGTTTGAAAGTACAATTGGTTTCAAGCTTCCTAACCACAGAGCTGCCAAGAGGCTGTGGAAGGTCTGCATTGAGCATCACACCTTCTTCAGGCTGGTGTCTCCAGAGCCTCCTCCCAAGGGCTTCTTGGTGATGGGTTCAAAGTTTCGATACAGTGGAAGGACACAGGCTCAAACCAGACAGGCCAGCGCTCTTATAGACCGACCTGCTCCACACTTTGAGCGTTCCACCAGCAAGAGGTACCTGCTGTCCAGGAGCTTGGACGGAGCAGAGTTCTCACGGCCGATTTCAGCCACGTGCGAGAACCACGACGGCCTAACTCACCGCAGCGTCAGTGAACAGCGCCGCCTCCGCAGCCCGTCCGTAGACGAGCAGGAGACCGAGCTGGAGGCGAGTTTAGAGCAGGACGAGGAAGCCAAGGACCAAGAGCGGAGCGAGGAGACGGAGACAGAATACGACGGCGATGTCACTCcaagcagaaagaaagaaatcatgGAGGAGGCTGGGTCACCAGTTGACAGTAAACAGGAGTTGGACCAGGAGGCCACTCCTCGGCACAAACAGGAGTTTCTGGATAAGTCGAAGGACGTCTTGCTGAAGCACCAGGCCAGCATCAACGAGCTGAAGAGAACCCTGAAGGAGCCGAACAGCAAGCTGGCGTACCGTGAGAAACTGTCATCAACTTCCCCAACTGGCACACCAGAGAAGAAGGCTTTGGTGGGCCGAGCAGTGGGAAAGGACCCTGTTAACAGCCAGTCTGTTGAGGGTTTCTTCCAGAAGACTGTGGTGACTTCACCTGAGGAGCCTGTCTCCACTCCTGCCATTTATGAAGAGCCGTTTGCTGATTTCAAGAAGGAGCTCGGGGACAGGAGGCCTCAGCCGAGCATAGCCtcggaggaggagcaggagcgGGACACGCTGGCCTGCATGAGGGAAAGCCACCTGGGCATCGAGCGCAAGTGCTCCAGCATGACGGTCAGCTCCACGTCCAGCCTGGAGGCTGAGGTGGACTTCACGGTCATCATGGACCTCCACTCCGGCGTGGAGGACTTCTCTAAGGGCATGTCGGAGCTGGGAGAGAGGGATCGACAGCCCGAGGTGGGCCgggaggactttgaggagaccTCCAGGTTCTACTCGGCCCGTCTAATGGGCTCCCGGGACAAGTCTCCCATAGAGGAGAAGCTTCCTGAGGAGGGCAGACATCATGAGCCTCCTGTGGCAAAGAAAGAAGCCAGCGCTGTGAGCGTGGCCCATATGCTGAAGAGGGGTGACACCAAGACGGAGACGCATACGAATGGGTCGGAGATCCACCCCAACATCATGAATGTCTCACCGCAGaACTATGGAGTTGTCAGCCCGCTGGAGGCTCCTGCTGCCCTCAAAGAAAATGGCTCCCCTGTTAAAGCTGGAACCCAGGGGAGGGAGTCTGTTGTGTCCCCGCTGACCATCACTGCTGAGAGCGTCACCTCAGCAACCACAACTCAAGTTACcaagaCTGTGAAAGGAGGCTACTCAGAGACCAGAATCGAGAAAAGGATTATAATCACAGGAGATGATGATGTGGACCAACATCAGGCCCTCGCCATGGCAATCCAAGAGGCCAAGCAGCAGCACCCCGACATGCAGGTGACAAAAGCAGTGGTTATCAGGGAAACCGAGTCTCCCACTgaggagctgctgcagcagcaggcagagTCCTGATCCTGAgacgggggggtggggggacagTGGAGGATCCTTCAGCTGTGTGTCTCCTGGCCCGCACTGCAGTACGCCACCACCCAGATATGAGGACTCTCTACCCCGCCTGTGTAAACAACCTACATGAGTACAGACTGCGTTCCATTAAGCAGTAGAACCTCCACTCTTGTCCCTTTAGACAAACCAACTGTGACTCGGCGCCTGACCCGTTCCGGCCTCCTGCCCGTCCCGGCCCGTCCCGGCGCGTCCCGGCCTGTCCCGGCCCGTCCCGGAGTGATGCAAGATTGAAAGTGAAACCCGGGCAAAGCTAATTGAATTCACCGCTGTCAGAGTCATTTGTCTAAAACCTTACTTGTGTATTATTTAATCAAATGCATTTTGACTCCTTTGAACCCTGTGGGTCATTTGAATCAATACAGTTTCAACCCCAAACAAAACGTCTcccagccccccccccaaccccgaTACCCTTCCCTCACAAATGACTACTTTCACTTGTAAGGTCCCAAACACCTGTTGAAAATGTAATGAATAAGATATGAGAGCAGTAGAGGATGAGgagagtggtggtggtggtggtggtggtggtggggtgtGGCTGCGAGGTTGGTGGCAAGAGGCAGCCTTCTGCTCGATGTTGCCACCTCCTGGCTGTGACACCTTCAGTATAATCAACAGCTGTCTTACtagctttttacatttttatctatAGAGGATCTAATTTATGTCCCGTGTTTGCTCGTTTATGAAATATGTATAATATCAGATGATTATAATCTGCatgattcaataaaaaaaacagcagagggaatgaaaaataaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48305 lncRNA upstream 16080 4937962 ~ 4940271 (+) True G36044
TU48293 lncRNA upstream 75957 4851254 ~ 4880394 (+) True G36035
TU48291 lncRNA upstream 106313 4849754 ~ 4850038 (+) True G36034
TU48283 lncRNA upstream 108131 4807691 ~ 4848220 (+) True G36026
TU48277 lncRNA upstream 146373 4805045 ~ 4809978 (+) True G36025
TU48315 lncRNA downstream 10954 5054431 ~ 5054972 (+) True G36054
TU48384 lncRNA downstream 190906 5234383 ~ 5234591 (+) True G36105
TU48385 lncRNA downstream 232976 5276453 ~ 5278682 (+) True G36106
TU48400 lncRNA downstream 394680 5438157 ~ 5440609 (+) True G36114
TU48455 lncRNA downstream 650916 5694393 ~ 5694946 (+) True G36145
XM_039797913.1 mRNA upstream 22187 4911699 ~ 4934164 (+) False cdk5rap1
XM_039797912.1 mRNA upstream 22187 4911700 ~ 4934164 (+) False cdk5rap1
XM_039797321.1 mRNA upstream 52661 4893449 ~ 4903690 (+) True rpn2
XM_039797322.1 mRNA upstream 52661 4893449 ~ 4903690 (+) False rpn2
XM_039797317.1 mRNA upstream 63572 4881206 ~ 4892779 (+) True mybl2b
XM_039798207.1 mRNA downstream 566533 5610010 ~ 5665053 (+) True cntn3b
XM_039798206.1 mRNA downstream 573278 5616755 ~ 5665053 (+) False cntn3b
XM_039798002.1 mRNA downstream 750255 5793732 ~ 5905163 (+) True pdzrn3b
XM_039798003.1 mRNA downstream 750255 5793732 ~ 5905163 (+) False pdzrn3b
XM_039798004.1 mRNA downstream 833987 5877464 ~ 5905163 (+) False pdzrn3b
XR_005638977.1 other upstream 22187 4911700 ~ 4934164 (+) True cdk5rap1
XR_005638978.1 other upstream 22187 4911700 ~ 4934164 (+) False cdk5rap1
TU48130 other upstream 370876 4556704 ~ 4585475 (+) False G35921
TU48469 other downstream 877447 5920924 ~ 5924400 (+) True G36156
TU48489 other downstream 991623 6035100 ~ 6052769 (+) False rybpb
TU48651 other downstream 1591825 6635302 ~ 6638387 (+) False setmar
TU48863 other downstream 2198732 7242209 ~ 7258950 (+) False G36458
TU49260 other downstream 3184285 8227762 ~ 8228720 (+) True G36744

Expression Profile