RNA id: XM_039797321.1


Basic Information

Item Value
RNA id XM_039797321.1
length 2753
RNA type mRNA
GC content 0.49
exon number 18
gene id rpn2
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 4893449 ~ 4903690 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttgaaatgccaAATGTACAGCCGGATATTATACCTTTGATGACAGCTCACACTCTCAGACACCGGAAGCAATCGTCGGTTTTGGTGACGCTGCATTAGACTGCAAGACATGGACCGGTCTAGACTGTTCggcttcttcctcctcctcagcctggctcttTCTGGGGCTCAGGCGCTCACCCCGGCGCACTACCTCTCCTTGTCGGATGTTGCCCGACTGCAAAACCTCCTGAGCCAACAGTTCACGGATCTGGACTCCGCATACTACTCTGTTGTTGGTCTGACCAAGCTTGGAGCAACTGTTCCTGATCACGAGGGAGTATGCCAGTTTCTAAAATCCCAGCTGGATCCCTCTAGTGTTGACTCTCTCTTCTTTGCTGCTGAGACCAGTCAAGCCATTTCAGGATGTGAGATCCCTGTGTCCAATGAAACCCGCGACATCCTCCTGGCAGCAGTGAGCGAAGATTCGACCATGACTCAGATTCACAGAGCCGTGAGCGCCCTCAGCTCTCTGGGGCTTCCTCTGGCTTCCCAGGAAGTTGTAGGTGCCTTGACGGGGCGCATCAACAAGGAGGACAATGTTATGGCTATCACTTCAGCTCTGCAAACAGCAGCCCGCCTGTCCCAGCAGGCCGAACTTGGAGGAATACTGGAGGAAATTGAAGATCTGACCGCTCGTTTGGATGATCTTGGCGGCATCTACCTCCAGTTTGAAGAGGGACTTGAGGCGACTGCCATGTTTGTGACCGCTGCTTATTCCCTGTCGGATCATGTAGACATGGAGCCCCCTCTGAAGGAGGACCAGGTCATCCAGCTGGTGAACTCTATCTTCAGCAAGAAATCCTGGGACTCTCTGGCCGAGGCCTTCAGCGTGGCAAGTGCTGCCGCTGCTCTGTCCAACAACCGCTTCCATGTGCCGGTCATTGTCAGTGCTCAGGGCCCAGCCACAGTGTCCCACAGCCAGCCAACCCTGcagCTCCTTGTTACTGATGTCATGTCTCAACCTTTGGCCTTAGCCAACGTGCTGGTGGAATCTGCGTACGCTGTGGCCTCCAAGAGCATCATTCTCAGCCAATCTCCATTCACACTTAATGATGGCGTCTTTGAACTGAACTTCATGTCCAACCAGCCAGCCAGTGGATACTACCAGTTTACCATTGCAGTGACCGGAGATACCCGGCTTGTTGCCAATCATGTTGAGCTTAAAGTGAAGGTGTCCACTGAGGTGGCTGTCACCAACATGGACCTCTCCGTGGTGGATAAGGACCAGAGCATCGGCACAAAGACCATCAGGGTGGACTATCCTTCCAAAGCCAAGAGCTCCTTCACAGCAGACAGCCACCAAAACTTTGCTATGTCATTCCAGCTGGTTGATGTCAACACTGGGGTGGAGCTTACCCCTCACCAGACTTTTGTCCGCCTGCACAATCAGAAAACTGGCCAAGAAGTTGTGTTTGTGGCTGAACCCGACAGCAAAAATCTGTACAAGTTTGAGTTGGACACAGCAGAGCGGAAATCCGAGTTTGACTCCATGTCTGGCACCTATTCCCTCCACCTCATCGTTGGGGATGCTACCTTGGAGAATCCCATTTTATGGAACGTGGCTGATGTTGTTCTGAAGTTTGTGGATGAGGAGGCCCCAGCGACCATTCAGCCCAAGACTCTTTATGTACCCAAACCAGAGATCCAGCACCTATTCAGGGAGCCAGAGAAGAAGCCTCCCACAGTGGTTTCCAATACCTTCACTGCACTCATCCTGTCTCCCTTCCTGCTTATGCTCATCCTGTGGTTTAAGCTCGGAGCCAACATCTCCAACTTCAGCTTCTCTCCCAGCACCGTTCTGTTCCATGTAGGACACGCAGCCACGCTGGGCCTCATGTACGTCTACTGGACTCACCTGAACATGTTCCAGACTCTGAAGTACCTGGCGATTATCGGCGGGGTGACTTTCCTCGCCGGGAACCGCATGCTGGCCCAGAAAGCAGTGAAGAGGATTGCAGCAGAGCAAAGTAGTAGGTTGGCAAAGTATAGGAGCCTACGATAAAGCCCCCATTTGTAACAAATGAGTCGGTCGTGTTTCCAGGCTGAAaATTGAGAAAAAATAAGAGCACGAAAAGTAAAAAGAAGGCACTGACGAAGCTCATTTTTTGTTTCCAAGGAGTCATTCAACGACGCATCAAATCAGACTTTAAAACACGGCGCGGCAGTTCAAGAATCCAGTTTAAACATGCGTTCGTCTGTGTTGCCAAAAGGAAGAAATCGAGAAATCACAGCGTCTCTGAGGACAAACCCTCACTGACAGATACTCTCACTGACGGCTGAAAGCTACTGATCATTGCACTTCATCTTCCTGCGAGATTTGTTTTCTTATTGTCCAACATGCCAGTGTTTTCTAAGTGAGCtgggtttttttatttgtggttTCTTGATGGATTTTGGgtttatttgtgctttttttttttttttttgtacattccTCTTTTTTCGCTCAATGCTCATTTCACCTCGTAACAGAAACTGTTAGTTCACTTGTTTCAGCTGATAAAAATAAACCCATTGGCAGTAGCACTGAAACATTGAACGTTACTTACTATGCCAGTGTGTTTGCCTGTTTGGTGCATCAGATGTGCGGTAGTCTCCAATTTGATACGGAGTTGGCGTTCCCCAGAAAAATTGTTAATAAGGAAATATGGGCTATTTGAGGAAGTGATGTTTTTTGTAATGAAGAAGAGGAAATAAAGAAATTGAGGTGAA

Function

GO: NA

KEGG:

id description
K12667 SWP1, RPN2; oligosaccharyltransferase complex subunit delta (ribophorin II)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48293 lncRNA upstream 13055 4851254 ~ 4880394 (+) True G36035
TU48291 lncRNA upstream 43411 4849754 ~ 4850038 (+) True G36034
TU48283 lncRNA upstream 45229 4807691 ~ 4848220 (+) True G36026
TU48277 lncRNA upstream 83471 4805045 ~ 4809978 (+) True G36025
TU48271 lncRNA upstream 92465 4799971 ~ 4800984 (+) True G36022
TU48305 lncRNA downstream 34272 4937962 ~ 4940271 (+) True G36044
TU48312 lncRNA downstream 113962 5017652 ~ 5018636 (+) True G36051
TU48315 lncRNA downstream 150741 5054431 ~ 5054972 (+) True G36054
TU48384 lncRNA downstream 330693 5234383 ~ 5234591 (+) True G36105
TU48385 lncRNA downstream 372763 5276453 ~ 5278682 (+) True G36106
XM_039797317.1 mRNA upstream 670 4881206 ~ 4892779 (+) True mybl2b
XM_039797318.1 mRNA upstream 13839 4875383 ~ 4879610 (+) False ift52
XM_039797319.1 mRNA upstream 13839 4875458 ~ 4879610 (+) True ift52
XM_039797316.1 mRNA upstream 18175 4869714 ~ 4875274 (+) True acot8
XM_039796711.1 mRNA upstream 96189 4793581 ~ 4797260 (+) True ppp1r3db
XM_039797913.1 mRNA downstream 8009 4911699 ~ 4934164 (+) False cdk5rap1
XM_039797912.1 mRNA downstream 8010 4911700 ~ 4934164 (+) False cdk5rap1
XM_039796916.1 mRNA downstream 52661 4956351 ~ 5043477 (+) True LOC120556975
XM_039796920.1 mRNA downstream 52661 4956351 ~ 5043477 (+) False LOC120556975
XM_039796921.1 mRNA downstream 52661 4956351 ~ 5043477 (+) False LOC120556975
TU48130 other upstream 307974 4556704 ~ 4585475 (+) False G35921
TU48133 other upstream 307974 4556704 ~ 4585475 (+) False G35921
TU48129 other upstream 307974 4584239 ~ 4585475 (+) False G35921
TU48132 other upstream 335420 4496695 ~ 4558029 (+) False G35921
XR_005638977.1 other downstream 8010 4911700 ~ 4934164 (+) True cdk5rap1
XR_005638978.1 other downstream 8010 4911700 ~ 4934164 (+) False cdk5rap1
TU48469 other downstream 1017234 5920924 ~ 5924400 (+) True G36156
TU48489 other downstream 1131410 6035100 ~ 6052769 (+) False rybpb
TU48651 other downstream 1731612 6635302 ~ 6638387 (+) False setmar

Expression Profile