RNA id: XM_039796711.1


Basic Information

Item Value
RNA id XM_039796711.1
length 1444
RNA type mRNA
GC content 0.46
exon number 3
gene id ppp1r3db
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 4793581 ~ 4797260 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TATATATTTACATAACCCTTGTTTTCATAGTCTAACCCTACATTTCAAAATCTATAATGATATGCATGGATTGACAACCTGAACTATGCTCAATGTGCTAACTAATTGTGCAACCCTTTTTCTGCACTAGTCagctcttcacacacacacacagtagatctatctatctttttatttattttgttgcaGGACAAGAATGGACCAGAATCCGATTGCAGTGAAAACCCATTGAGATGTTGTGTTTAGTGTGCTGTGGAGTGTTACTGGTATTCGCTGGCAGAGGCAGGCTGTCTGTCATCTGGTGGCAGTTGGGTTCGTAGCAACTGTGCTTCCTGACAGTGAACAAGGTCAGTGCAAGAGGCAGCGGCTCCACAACAGAACACGAGAAGTCTCTGCTGGAAAGGTGTGTTTGATGTGACAAACATGGCCGGTTCTGGTGAAAAGAGTGGGACCCAGCCTCAGTTCATCAGTGGTTCCAGTAATGTGTGCACCACTAGAAACACCACCATTCGTCTTCGGGACATTTATGATCCCAAACCTCAACCTCCCAAAGCCCCAGTCCGGATACGCCCTCCAGGTCCAAGAGCTCCCTCAGTAAAGGAACTCAATTTAAAGCACAGCTTTCCCAGTGATCCTCAAACCAAGACAATCATGAGGAAGCGAGCTCAGTCTCTCCCTTCGTCTGCAGACAGGAAAAGGGAACTTCGGAGTCTGCAGGTACGCTTTGTGGACTCATTGGGCCTCGAGTTAGAGGATGTTAAGGTCTTCAAAGCTCAAGAGCACCCCATGATACCTCAGCATGTTATGTTCAGACTACTGATGAGCTCTGAGCTGGCTTTCGGGAGGTCTTTGGAGCTGTCCCTGCCTTACTTCAAACCTTGCTTCCCTGAAAATATGGGGGCTCAAACAGACTTCATGAAGCGTCTCTGCGCTCAGAGCGTGTGTCTGGAGCAGGTCCTGTGTTCAGAGCAGGGGATAACAGGCACTACACAAGTACTCAATTTAGCTTATGAGAAAGAAGTCACAGTGCACTACTCTTTCACCAACTGGAAAACACACACGGAAACAACAGCATCCTGGGTGTCCACTGGGAACCGTGGGGAGTGTGACGCTCCAGAAACAGATATCTTCAGATTTCGTCTACCTGTCCCACCCTTCATTCTGCAGCCAGGAGCCATTTTAGAATTTGCCATCTGCTACCATGTAAAAGGATGTGATTATTGGGACAACTACAATGGACGTAATTACAAACTGTCATGTCACAGTTATAAGGTGACAGTGCCCAGGGAGTGCGAGGACAGCATGCTGCATTTTACCTGAGTGTCCACACGAGCGAGCTGTAACCCCTGCATGCACATATGGGTGACAAGAAAGcaaaattaattttactttaaaggggtgatagaatgattatatagggtatttcacactgttccttaaggtc

Function

GO: NA

KEGG:

id description
K07189 PPP1R3; protein phosphatase 1 regulatory subunit 3A/B/C/D/E

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48182 lncRNA upstream 99016 4691055 ~ 4694565 (+) True G35958
TU48165 lncRNA upstream 176184 4615893 ~ 4617397 (+) True G35942
TU48164 lncRNA upstream 180577 4610538 ~ 4613004 (+) True G35941
TU48146 lncRNA upstream 183521 4605460 ~ 4610060 (+) True G35925
TU48010 lncRNA upstream 423360 4369919 ~ 4370221 (+) True G35834
TU48271 lncRNA downstream 2711 4799971 ~ 4800984 (+) True G36022
TU48277 lncRNA downstream 7785 4805045 ~ 4809978 (+) True G36025
TU48283 lncRNA downstream 10431 4807691 ~ 4848220 (+) True G36026
TU48291 lncRNA downstream 52494 4849754 ~ 4850038 (+) True G36034
TU48293 lncRNA downstream 53994 4851254 ~ 4880394 (+) True G36035
XM_039798253.1 mRNA upstream 25889 4745444 ~ 4767692 (+) True LOC120557706
XM_039797343.1 mRNA upstream 63954 4708681 ~ 4729627 (+) True txnrd3
XM_039799179.1 mRNA upstream 109237 4681878 ~ 4684344 (+) True LOC120558218
XM_039797904.1 mRNA upstream 208224 4584329 ~ 4585357 (+) True LOC120557508
XM_039797897.1 mRNA upstream 222046 4569910 ~ 4571535 (+) True LOC120557502
XM_039797316.1 mRNA downstream 72454 4869714 ~ 4875274 (+) True acot8
XM_039797318.1 mRNA downstream 78123 4875383 ~ 4879610 (+) False ift52
XM_039797319.1 mRNA downstream 78198 4875458 ~ 4879610 (+) True ift52
XM_039797317.1 mRNA downstream 83946 4881206 ~ 4892779 (+) True mybl2b
XM_039797321.1 mRNA downstream 96189 4893449 ~ 4903690 (+) True rpn2
TU48130 other upstream 208106 4556704 ~ 4585475 (+) False G35921
TU48133 other upstream 208106 4556704 ~ 4585475 (+) False G35921
TU48129 other upstream 208106 4584239 ~ 4585475 (+) False G35921
TU48132 other upstream 235552 4496695 ~ 4558029 (+) False G35921
XR_005638977.1 other downstream 114440 4911700 ~ 4934164 (+) True cdk5rap1
XR_005638978.1 other downstream 114440 4911700 ~ 4934164 (+) False cdk5rap1
TU48469 other downstream 1123664 5920924 ~ 5924400 (+) True G36156
TU48489 other downstream 1237840 6035100 ~ 6052769 (+) False rybpb
TU48651 other downstream 1838042 6635302 ~ 6638387 (+) False setmar

Expression Profile