RNA id: XM_039797343.1


Basic Information

Item Value
RNA id XM_039797343.1
length 3665
RNA type mRNA
GC content 0.48
exon number 16
gene id txnrd3
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 4708681 ~ 4729627 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TATAATGGTGACTCAGATCAAGTGCACCCTTAGTAGCAAGAGAAGAAATGGTAAAATAGGTTTGGCGCGGCTGGTAGACTAGCAGCTGAGTGCAGAGGCAGAGAAACCTAGGTCAAATCCGCGGTCCAGCTGCTTTTTAGTATTTAAGGCGGGCCGAGAGACATTCGTACATTTACTAAGAGAGACTTGGTCCGGTTTAATTTGGGGTTCACCCTCAGTCTCTTGTCAGCCGTCTATTGAAGCTTGCCCTGCGCAGGCAGACGGGAATACCTTGAAAATGCCTCCCATCGATAATGACACCGGGAAGAACGAACTCAAATGTCGGATACAGCAGCTTATTGACTCCAATCAAGTGATGGTTTTCAGTAAAAGCTACTGTCCGTTTTGTATCAAGGTGAAAGACTTGTTCAAAGAGCTGCAAGTCGATTGTAATGTGGTGGAGTTGGATCTCATAGAGGATGGAACTAACTACCAGGAGATGCTGCTCGAGATGACCGGACAAAAAACTGTTCCTAATGTCTTCATCAACAAGACGCACGTTGGCGGCTGTGACAACACAATGAAGGCTCATAAAGACGGCAGCCTGCAGCAGCTACTGAGCAATAATGAAGCTTATGACTACGACCTGATAGTCATCGGAGGAGGCTCTGGGGGCCTGGCCTGCTCAAAGGAAGCTGCTGCATTGGGGAAGAAGGCCATGGTACTGGACTATGTTGTGCCAACACCAAAAGGAACAACCTGGGGTAAGTCACTCATGTGTCTTTTTTGGGGTAgaatgttttttgtaatttttttaaacatctgcaTTCCCAAGAAGCTGATGCACCAGACGGCCGTGCTGGGCACCGCCATGCAGGACGCACGCAAGTTCGGCTGGGAGTTTGACGAGACAGTGAAGCACAACTGGGAGACGATGAAGACGGCGGTGAACAACTACATTGGCTCGCTGAACTGGGGCTACAGGGTGGCACTGAGAGACAAGAATGTCAACTATGTCAATGCCTATGCAGAGTTCATTGAACCACACAAAATCAAGGCAACAAACAAACGGGGGAAGGAGACCTTTTACACAGCGGCCAAGTTTGTCTTGGCTACAGGCGAGAGGCCGCGCTACCTGGGCATCCCTGGAGACAAGGAGTACTGTATCACCAGTGACGACCTCTTCTCGTTGCCCCACTGCCCGGGAAAGACCCTTGTGATCGGGGCATCGTACGTGGCTCTGGAGTGCGGTGGTTTCCTGGCCGGCCTGGGTCTCGATGTCACCATCATGGTCCGGTCCATCCTGCTGAGGGGCTTCGACCAGGACATGGCCAACCGTGCCGGAGAGCACATGGAGGAGCACGGTGTCAAGTTCCTCCGCAAATACGTCCCTGTAAAGatagAGGAGCTGGAAGCAGGCACTCCTGGCAAGCTGAAGGTGACAGCCAAGTCCACAGAAACCGATGAGCTCATCGAGGGAGAGTACAACACTGTGTTGATAGCAGTGGGCCGAGACGCGTGCACAGACAAGGTTGGCCTGGACAAGGCAGGGGTCAAAGTCAACCCCAAGAATGGAAAGATTTCAGTCAACGATGAAGAGCAGACCAATGTGCCCCACATCTACGCCATTGGAGACATTCTGGACGGCAAGTGGGAGCTGACTCCTGTAGCCATCCAGGCTGGCAAGCTGCTGGCACGACGCCTCTACGGGGGCTCAACGCTTAAGtGCGACTATGTCAACGTTCCCACCACTGTCTTCACCCCACTGGAGTACGGCTCCTGTGGTCTGTCAGAGGACAGAGCCACCGAGCTCTATGGGCAGGACAACCtggagGTGTTCCACAGTCTGTTCTGGCCTCTGGAGTTCACCGTGCCCGGcagagacaacaacaaatgctACGCTAAGATCATCTGCAATAAACTGGACAACGATCGAGTCATTGGGTTCCACTATCTGGGTCCAAATGCTGGAGAGGTGACGCAGGGCTTCGGTGTAGCCATGAAATGTGGTGCCACCAAGGAGCAGCTGGACTCCACCATCGGCATCCACCCAACCTGTGCTGAGATCTTCACCACTCTGGATGTAACCAAGAGCTCTGGGGGAGACATCACCCAGTCCGGCTGCTGAGGTTAAACCCTGCGCGTTTAGCGGGCTGCTCTCATATTAGGCTCTCCTACCAACTCCTCTCATCTTAGTTTTTAAAGCTCCGCCTCCCCTCCAGCTGCTCCGTCTACAGGGCAGTTGTTTCTCAGGACAAACGTAACACCGTGGCCAGCGTCTGAATGAGCCTCGAGGCGACTGAAAGAATCCAGAGCTGAGGATGTGCAAGTCTCCAGCTCTGGCTGAGGTAGTTTGATATGAGGGCAGCCTGCTGAACAGCGGGGTTACTCTGCTGCTATTTCTCCTGGGCTCCACTAGTGTGTCCTTCTCAGAGgagcaccaacacacacactctactactgagaacgtgtgtgtgtttgggctgTTTGTGACGTCCTAGCCCGTAACCTGAAATACTCGGGTGGGCGAGGATCGATGTCCCTCTGCAGAAGCGCCTGGCGGGGGCCCAAACCCTTCGTCCAACTCCCAACTTCAAACACTTCTCATCCACCCCCCAGTATACAGATTCCATACGGACTGGAATTGACTTCAATAAGACATTAAAATGTGCACACAACCAGGGTTTGAATGGATGCACGGCTCTGAACTCTGGTCCAGCTTGTGATGGAAACCTTCTGTAATCTGGTCTGTCTGTGCATGTATAGATTGACTGTCATCACGTCTTTTCTGTTGAGCCTTCACCATTCCACACATATTCCTCTTACCAGGTCTTTAGGATGAAATTGAGGCGCATACATGTTGCTGTCAATATGCGTCTTTTGCTATGTGGAGGCACTGGGggttttctgccttttttaaaGAGAACTATCTttacagggttcatacgttttgaaaaaacctggaaaagttatggaatttgaaaaatgcaaattccaggcctggaaaggttttggaaacctaaaaagacccagaaagttttgggaaagtcatgtaatgtttttttttaacacagcataataatgtcattaataaatgtattttcacgttGTCTTAACCTCAACGTTGTATTCGGGGAGAGATATGATTAATCCATctatgaaccacagacattatcattcatgttatagttaaacctctgagggtaaactttaacaccgatttgtattcttattgtataatgtcgactgacattttcaggaacacatagtcatggaaatttgccaaaaagtcatggaaaagtattggttaaaatgcgtatgaaccctgtcTTGATCTCTTCCAAAGTATTTCTCTAAACAAGTCTGCAGAGAGATCATGAGTCGGCACCTTTCCAACCTTGATGTGCTGCATCACAACCCTTTCAGATAAAATTTAATGGAAAATACAACCGGAATTGTAccgaatgtttaaaaaaaagaaaccttttCTAAATTAAGTTAATGCTTGTTTGTTGCATCTTGCTGTTTGCCTCTgctttatgtgtatgtataaagATCTGTTCAATCTTCTAGAGGACGGCGTTCCAGCTGCTGTCGGTCATCTGTATGAATGACTTGTTTGTTGGTGTCAGACCGCTGTAGATGACTTCTCTCTAAAGATTTAATAAAGACTGAATTCTCCTTCA

Function

GO:

id name namespace
GO:0045454 cell redox homeostasis biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0004791 thioredoxin-disulfide reductase activity molecular_function
GO:0009055 electron transfer activity molecular_function
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0050661 NADP binding molecular_function
GO:0015035 protein disulfide oxidoreductase activity molecular_function

KEGG:

id description
K22182 TXNRD; thioredoxin reductase (NADPH)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48182 lncRNA upstream 14116 4691055 ~ 4694565 (+) True G35958
TU48165 lncRNA upstream 91284 4615893 ~ 4617397 (+) True G35942
TU48164 lncRNA upstream 95677 4610538 ~ 4613004 (+) True G35941
TU48146 lncRNA upstream 98621 4605460 ~ 4610060 (+) True G35925
TU48010 lncRNA upstream 338460 4369919 ~ 4370221 (+) True G35834
TU48271 lncRNA downstream 70344 4799971 ~ 4800984 (+) True G36022
TU48277 lncRNA downstream 75418 4805045 ~ 4809978 (+) True G36025
TU48283 lncRNA downstream 78064 4807691 ~ 4848220 (+) True G36026
TU48291 lncRNA downstream 120127 4849754 ~ 4850038 (+) True G36034
TU48293 lncRNA downstream 121627 4851254 ~ 4880394 (+) True G36035
XM_039799179.1 mRNA upstream 24337 4681878 ~ 4684344 (+) True LOC120558218
XM_039797904.1 mRNA upstream 123324 4584329 ~ 4585357 (+) True LOC120557508
XM_039797897.1 mRNA upstream 137146 4569910 ~ 4571535 (+) True LOC120557502
XM_039797899.1 mRNA upstream 149213 4558575 ~ 4559468 (+) True LOC120557505
XM_039797900.1 mRNA upstream 150906 4557226 ~ 4557775 (+) False LOC120557506
XM_039798253.1 mRNA downstream 15817 4745444 ~ 4767692 (+) True LOC120557706
XM_039796711.1 mRNA downstream 63954 4793581 ~ 4797260 (+) True ppp1r3db
XM_039797316.1 mRNA downstream 140087 4869714 ~ 4875274 (+) True acot8
XM_039797318.1 mRNA downstream 145756 4875383 ~ 4879610 (+) False ift52
XM_039797319.1 mRNA downstream 145831 4875458 ~ 4879610 (+) True ift52
TU48130 other upstream 123206 4556704 ~ 4585475 (+) False G35921
TU48133 other upstream 123206 4556704 ~ 4585475 (+) False G35921
TU48129 other upstream 123206 4584239 ~ 4585475 (+) False G35921
TU48132 other upstream 150652 4496695 ~ 4558029 (+) False G35921
XR_005638977.1 other downstream 182073 4911700 ~ 4934164 (+) True cdk5rap1
XR_005638978.1 other downstream 182073 4911700 ~ 4934164 (+) False cdk5rap1
TU48469 other downstream 1191297 5920924 ~ 5924400 (+) True G36156
TU48489 other downstream 1305473 6035100 ~ 6052769 (+) False rybpb
TU48651 other downstream 1905675 6635302 ~ 6638387 (+) False setmar

Expression Profile