RNA id: XM_039797912.1


Basic Information

Item Value
RNA id XM_039797912.1
length 4050
RNA type mRNA
GC content 0.43
exon number 14
gene id cdk5rap1
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 4911699 ~ 4934164 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctagcacttacactgactttttgcgttatctacacTGTATACTTAcaactaagtgtttgaagtgtgcaagtaggcggtttgagacacagccagtgacTTATTCAGTAACTTACGAGATAAACAATGGAAATAATGTTAGCTACAGAGTAGCGCTTAGAAAGTAGCTATATAGGGAGCATACGGTTGCTCGGTTAACCTTAAGAGCTAAATCCGACAGGTAGCTAGCTGCTTAAGCCTTTGGTCGTgtaagttagctaacgttaagcaTGGAATACCTCAGGAAACCCTTGTTTACCATTCCCCAACACTGGACTCCTCTCAGGTGTATTCAACCCAGATATTGTTCTAAATTAGCTAACACTAGTGTGACTCCAAGAGAGAGGAAGACGACTGTAAACAAGTTCAAGAGCCAGATATCCTCCGGTCCAAGTTTTCAGGATTTCATCAAAGGAGTGTCCGTTAATAAGACCTATGCTGCAGATGAAGAGTACTATGACGAACATAGTTATCTTTCTCGGGACTTGGAGATGGGGAATTCAAGGAAAGTGTATTTTGAAACCTATGGATGTCAAATGAATGTAAACGACACAGAGATAGCCTGGTCCATACTACAGAGGAAGGGATATCGACGCACATCTGACTTAAGTGAGGCAGACGTTGTCCTTCTGGTAACATGCTCCATAAGAGAAAAAGCTGAACAAACTATTTGGAATAGACTACAGCAACTAACTGCTATGAAGAAGAGACGGTTAAAGACCCGCACACCAATGAAAATTGGGATTTTAGGATGCATGGCAGAAAGGCTAAAGACAGAGCTTTTGGAGCGGGAGAAGCTTGTAGACGTTCTTGCTGGTCCAGACGCCTACCGGGACCTTCCTCGCCTGTTGACCGTAGCTGACGGAGGTCATCAGGCAAGCAACGTGCTGCTGTCGTTAGAGGAGACCTACGCTGACATCATGCCTGTACACCATGCTCCTCATGGATACAGCGCTTTTGTGTCCATCATGCGAGGCTGTGACAACATGTGTAGTTACTGCATCGTTCCCTTCACCCGAGGCAAAGAGAGGAGTCGACCTGTCAGCTCCATACTTGACGAAGTTCGTGTGCTCTCTGATCAGGGTGTGAAGGAGGTGACTTTGCTGGGTCAGAACGTCAACAGCTACAGAGACACTTCAGAAGAACAGTTCTGTGGCTCCGACGTGACCAAGCTCAGCCAGGGGTTTAAGACCGTCTACAGGACCAAACAGGGAGGTCTGCGCTTCTCCGACCTACTGGACCGAGTGTCCCGCATCGATCCCGACATGAGGATCCGATTCACCTCGCCCCATCCCAAGGATTTTCCCGATGAGGTTTTGCATCTGATTGCGGAGCGAGGGAACATTTGTAAGCAGATCCACCTTCCGGCCCAAAGTGGCAGCAGCGCGGTCCTCAAAGCAATGCGCCGTGGCTACACGAGAGAGGCCTATCTTGATCTTGTGAAGAACATCAAGAGAATTATCCCAGAGGTGAGTCTCAGCAGCGACTTCATCTCAGGCTTCTGTGGTGAAACAGAGGACGACCAGCAGCAGACTCTGTCTCTGATCAGAGAGGTGGGCTACAATGTGGGATTCCTGTTCGCCTACAGTATGAGAAAGAAAACCCACGCCTTCCATCGGCTACAAGATGACGTGCCAGCTGAGGTGAAGCAGCAGAGGCTGGAGGAGTGTATCGGTGTATTCAGAGAGGAAGCTGCACGGGTCAACGCTGCTCTCATCGGCAGCACGCAGCTTGTCCTGGTGGAGGGAGAAAGTAAAAGATCTGCCAAGGACTTGTGTGGGAGAACCGATGGCAATATGAGAGTGATTTTCCCCAAAGAGGATGTTGCTGTCCAGCCTGCAGAATCCAACACTGCATCAGTCAACGCTGGCGACTACCTGCTGGTGAAGATATTGTCGGCCAACTCCCAGAGCCTGAAAGGCCGAGCCCTTAGTCACAGCTCCCTGAGAGGCACAGCGCAACACTACGAGACCCTGCCAAGGCACCAGCTTGGTGAACGTGTGGCCTCAGACACAACCATGATTGAAACATGCCCTTGATTGACACAGTTTCCCTGCAGATGGATGAAGGCGTTACCAATGGACAGTCTGACACCAGTCCCTGGCACCAAATCCAGCGCAGACTTCGGTAATCCCACATCCACTATTTGCATACTGGAAGAGACAGCGTGCATGTTTGTAAAGGCACTTGGGATCCCAGTTTGCTATATCATTTACAGCGGTGTTGGATAAAAACTGGTGCATTACTTTGACAGGCTGTACTCGACTTTGCCAATGGGAGACACCTCCTGCGACCCTGAAATATCTGGGACTTTGATGGTCTTGAGTTTCTGCAGGATCGAAGTCATCCCCAGTTGTCTGCCTAACAAAATGCAAGgaaatgtgatgatgaaattctGGAGGCGTCGGTGCTTTTCCAAATGAAAGAGTACAAATGTGCTGCACACTTACCATATTCCAGGCCTTTTTCTGTTAGCTTGACCTCTACTCCAGGATTGGTGCCTAAAGTCATAGGGATTAAGGCCACCAGAGCCAGCCAACAGCACAGGAACATCTTGACTGTTGGGAGATAAAAAGGACAATGTGGGTGACATGTTTGCTGTTCTGCATGGAATTTCTAGGAAGCACGAAGCTTCCTCTTTTAGAGCAGCTTAGCTTTTCTTTGTATGATTGGTTTCGTATTTACTGATATATCCCATTCATAGGAGACAATTCTAATCGTACATTGCTTAGGTCAGTGGCTTCTTCTTAAAGCACAGCcccttcttttttaaataactatcaACATTTTCTTACTCTTCATGATCAAGACAATCTAAAATATAGTTTGCATGTATAGCGCTTTAGTCATTTTTCAAATAATGTtaatgtgaaataaaaagttAGGTCAAATTTGTGGAAGATTCTTTACTTCAAGTAAATAGACCaatatattaaagtaaaaatacttCATCACAATGCTCTGCATCCAAAATCCTACGTAGGTTAAAAGTACATTAGTATTATCAACAAAATATACTTCTGGTActatatttcatttcatttttttgtatttttactgaagtaaaaatacaaaaaaattgtCCTGTGACTAGCATATATGATAACAATTTATTAACATCTGAAGTGTGACAAGGGCCCCACACAGTTTCCTAGATGTCACAAGCCATATAGTTTGGAAACCACTGATTtcacttttaaaaatatattgtatttaaTAAGCTTATCATATGTTTTTAAATCTATaaatcttaatctgaaaagtaactccACTGCAAATACATTTTATGTATTAAAAAATTTAGTATTTAATTTTTTCCCTTTGAATGTGGTGCAGGAGAAGTATAcagtagcaaaaaaaaatatggcAAAAATCAATTAATGATCAAACTAAATTGTACTAAATGTACTTTCCACCCCAGCCTTGGGTTGGGGGGGGGCTGTGAAAGAGCTGACTATCAGAGTGCTGTAGAGGAAACCACATGACCCCTGATAAGTCAGCAGGCAAGCCAGACTTTATTAAATTAGGCTGAAAATAAAGGCCCAGTCCTCCATTTTTGTCCATTTTGAATAGGGATATTTTAATCCGTGTGGAAAGATTTTACACATCTAATATTCACTTTTTGGAACAATCTGGTCTATTGCATTTCAAGATACAATTGCAATATTTCAGTGTCAGCAAATGATATGGCTTGaacatgctgtttttttgttgttttttttacaatcaaGAGCTCTATCAGTTAAGGAAGAAAGAACAATTTTAACAATATTGTGCCTTTTTTTGTGCCTGTGACGTTGCTTGAACTTTAGTATGTTGCATATTCAAATGAACAGCTTTAGGCTCTGAACATGTTCGTGAGCAGACTGAATGATATAGAGAGACTGAACTGACAGAATGCGAAGCATGTGACTACCAATGGAAGTTTCCATGTGGGTCAGAAGAGTAGATGGAAAAGGTGCGCTttcatcaacaacaaaaataaaaaactgtgtAAACATGGTATATAAAAGA

Function

GO:

id name namespace
GO:0006400 tRNA modification biological_process
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0051539 4 iron, 4 sulfur cluster binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48293 lncRNA upstream 31306 4851254 ~ 4880394 (+) True G36035
TU48291 lncRNA upstream 61662 4849754 ~ 4850038 (+) True G36034
TU48283 lncRNA upstream 63480 4807691 ~ 4848220 (+) True G36026
TU48277 lncRNA upstream 101722 4805045 ~ 4809978 (+) True G36025
TU48271 lncRNA upstream 110716 4799971 ~ 4800984 (+) True G36022
TU48305 lncRNA downstream 3798 4937962 ~ 4940271 (+) True G36044
TU48312 lncRNA downstream 83488 5017652 ~ 5018636 (+) True G36051
TU48315 lncRNA downstream 120267 5054431 ~ 5054972 (+) True G36054
TU48384 lncRNA downstream 300219 5234383 ~ 5234591 (+) True G36105
TU48385 lncRNA downstream 342289 5276453 ~ 5278682 (+) True G36106
XM_039797321.1 mRNA upstream 8010 4893449 ~ 4903690 (+) True rpn2
XM_039797322.1 mRNA upstream 8010 4893449 ~ 4903690 (+) False rpn2
XM_039797317.1 mRNA upstream 18921 4881206 ~ 4892779 (+) True mybl2b
XM_039797318.1 mRNA upstream 32090 4875383 ~ 4879610 (+) False ift52
XM_039796916.1 mRNA downstream 22187 4956351 ~ 5043477 (+) True LOC120556975
XM_039796920.1 mRNA downstream 22187 4956351 ~ 5043477 (+) False LOC120556975
XM_039796921.1 mRNA downstream 22187 4956351 ~ 5043477 (+) False LOC120556975
XM_039796922.1 mRNA downstream 22187 4956351 ~ 5043477 (+) False LOC120556975
XM_039796923.1 mRNA downstream 22187 4956351 ~ 5043477 (+) False LOC120556975
TU48130 other upstream 326225 4556704 ~ 4585475 (+) False G35921
TU48133 other upstream 326225 4556704 ~ 4585475 (+) False G35921
TU48129 other upstream 326225 4584239 ~ 4585475 (+) False G35921
TU48132 other upstream 353671 4496695 ~ 4558029 (+) False G35921
TU48469 other downstream 986760 5920924 ~ 5924400 (+) True G36156
TU48489 other downstream 1100936 6035100 ~ 6052769 (+) False rybpb
TU48651 other downstream 1701138 6635302 ~ 6638387 (+) False setmar
TU48863 other downstream 2308045 7242209 ~ 7258950 (+) False G36458
TU49260 other downstream 3293598 8227762 ~ 8228720 (+) True G36744

Expression Profile