RNA id: XM_039798002.1


Basic Information

Item Value
RNA id XM_039798002.1
length 4165
RNA type mRNA
GC content 0.53
exon number 10
gene id pdzrn3b
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 5793732 ~ 5905163 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAGCTTGTACTTGTTAGTCGGTCTGTGAGCGCTCCACCGATGACCAGCTAAAAACGCCCCACTGCTCCGACTCAGATCTGCGGGGGCTGGGGAGTCGACAAGTTTGGATTTGGACTTTGAAAACCATGGGATTCGAGCTGGACCGCTTCAAGGGGACCGTGGACCCGGATTTTAAATGCAACTTGTGCAATAAAGTCCTGGAAGACCCGCTGACGACTCCGTGCGGTCACGTCTTCTGCTCCGGCTGCGTGCTGCCCTGGGTCGTCCAGCAGAGCAGCTGCCCCGTCAAATGTCAGCGGATCTCCGCCAAAGAGCTGAACCACGTCCTGCCTCTGAAAAACCTCATCCTGAAGCTGGAGATCAAATGTGACAACCACGCGAGGGGCTGCGATGCGGTGGTGAAGCTGCAGCATCTGGCCGAGCACGCCGAGATGTGCGACTACTCCCCGGAGAAGTGCAGGAATAAAGGATGCGACGAGGTGCTTAGCCTCCGGGACATGGATGCTCACATGCGGGAGACTTGCGACTACAGACCGGTGGGGATATGCGAGAGCGGCTGCGGATTGACGCTCACTCATAAAGAGCAGAAATTAAACAGCCACTGCTGTATGAGAGCCCTGAAGGCGCACAACAGCGCGCTGCACTGCAAAATCATCAGCCTGGATAGAGAGTTCAAGAAGCAGACCATTAAAGCCAACAAGAGGGAGAAGTCACTCCTGGCACAACTTTCCGCCGTGCACACCGAGCTGCAAGTGACAGCTCTGAAATATCAGAAGAAATTCACAGAGTACAGCGAGAGGATCGATTCCTTAACCAAGACCGTGGCTTTCTCCTGCAAGgaaGGCGAGACTTTAAGCTTGACGGTTGTCCTTCTTCGTGAGGACGGATCTCTGGGTTTTAACATCATAGGAGGAAGGCCATGCGCGGACGACAATGACAGCACTTCGAATGAGGGAATCTTTGTATCCAAGATCATCGAGGAAGGTCCAGCGGACAAGGAAGAAGGCCTTCAAATCCACGACAGAATAATAGAGGTCAATGGCAAGGACCTGTCCAAGGCCACCCACGACCAGGCGGTGGAGGCCTTCCGCACCGCCAAGGAGCCCATCATGGTCCAGGTACTGCGCCGTGCTCCACGTCCCAAAGTGGTCAGCCCGGCTGGTGACACCCAGGTCTCAGACATCAGCACCCAGACAGACATCACCCTCCAGCACATCATGGCCCTCACCAAGCTGTCTCCGTCTTCGCCCCCCATGACGGAGCTGGAGGAGTATCTGCTTCCAGAGGAgCATCCTCCACATGCATACTTTGACCCCAATGACTTCCTGGAGGTGATACAGCAGGACATAGAGCGTGAGGAGCTGGAATATGAGGAAGTGGATTTGTACCGGGCCAATATCCAAGAGAAGCTCGGCCTGACGATCTGCTACAGgactgatgatgaggatgaggcTGGGATCTACATTAGTGAGATTGATCCAAACAGCATTGCTGCCAAGGACGGCAGGATTAGAGAAGGGGACAAAATCATTCAGATCAATGGTGTTGAGATCCAGAACCGGGAGGATGCTGTAGCGCTGCTGACCAGTGAGGGGAACCAGAATATCTCTCTGCTGGTGGCCCGACCAGAGATCCAGCTGGACGAGGGCTGGATGGATGATGACAGGAACGACTTCCTGGATGACCTCCACATGGACATGCTGGAGCAGCAGCACCATCAGGCCATGCAGTTCACTGCCAGCAGACTgcagcagAAGAAGCACGAGGAGGACGGGGGCACCACGGACACGGCCACGTTGCTGTCCAACCACCACGAGAAGGACAGCGGGGTGGGTCGCACAGACGAGAGCACGCGAAACGACGAGAGCTCGGAGCAGGAGAACCTCGGCGACGACCACACCACCAACACGCTGGGCAGCTGCCGGAAGCTCGCCTACAGCCAGGACACCCTGGGCAGCACCGACCTGCCCTTCAGCGGCGAGTCCTTCATCTCCGCCGACTACGCTGACGCCGACTTCCTGGGCATCCCGGCGGACGAGTGCGAGCGCTTCAGAGAACTCCTGGAGCTGAAGTGCCAGATGAGGAGCGGTGGAGCCCAGGGTCTATACCACCAGGGGGGCGGGGCCGAAGGCCAGGACCAAGAGTGTGTGGACAAAGAGCTGGAGATGCTCAACGAGGAGCTGCGCACCATCGAGCTGGAGTGCTTGAACATCGTCCGCGCTCACAAGATGCAGCAGCTGAGGGAGCAGTGCCGCGAGTCCTGGATGCTCCACAACAGCGGCTTCCGCAACTACAACACCAGCATCGACGCGCGGCGCCACGAGCTCTCAGACATCACGGAGCTGCCGGAGAAATCGGACAAGGACAGCTCCAGCGCCTACAACACCGGCGAGAGCTGCCGCAGCACCCCTCTCACGCTGGAGCTGTCTCCGGACAACTCGCTCCGTCGAGGAGCGGAGAGTCAGGGTCCGGCCGGTGCGTCCGGCTCCGCCAGCTCTAGCGGCAGGATCCTCAAACCTCTCCTGTCCCCCGTCCAGGAAGCCTGTGGCCCAAGTCGGAGCAGAGGCTCCTCCAAGGATCCGGATGGAGCCTCGCAAGCCGAGAGCAAGGAGAGGAAGTTGGGAGAGTCCGGGAAATCCGGGCGGAGCTTTTCCCAGCCACATTCACCGTACAAGCACGCCCACATCCCGGCCCACGCCCAGCACTACCAGAGCTACATGCAGCTGATCCAGCAGAAATCCGCCGTGGAGTACGCCCAGAGCCAGATGAGTCTGGTCAGCATGTGCCGAGATGCCATCAGCCCCAGCGACCTGGAGCCTAAGATGGAGTGGAAGGTGAAGATCCGCAGCGACGGCACACGCTACATCACCAAGCGGCCCATCCGGGACAAGCTGCTGAGGGAGCGCGCCCTGCGCATTCACGAGGAACGCAGCGGTATGACCACGGATGACGACGCCATCAGCGAGCTGAAGATGGGCCGCTACTGGAgcaaggaggagaggaagcagCACGCAGTCCGCGCCAAGGAGCAGAGGCAGCGCCGCGAGTTCATGAAGCAGAGCCGGGCCGATTGTCTGAAGGAGCAGGCCGGTCCAGAGGACAAAAAGGAGCCCAACATCATCGAACTCAGCCACAAAAagatgatgaaaaagagaaataagAAAATATTTGACAACTGGATGACCATCCAGGAACTGCTCACCCATGGTACCAAGTCACCAGATGGCACAAGGGTTTACAACTCACTGCTGTCTGTGACCACAGTCTAAGTCCTGCTCTGTGTTCAGGTGGCGGGCCAGCCAGAGGAGGACAGACTGGAGTGTAATGGACTGTACATAGGACACTACCAGTAGGGGTAGAGATTCCTGCCTCGTTCaatgtggcaacattttgtATATAGGAAATAAAGAAAGCCTTTCCTGGACAAACATTTTCCACCACTGCGGTGAAGAGAAGGCCTTTTATAATGATGGTTGAACTCGACATGAATGGGACATGGCTATGGTGAtgattttgaaaacattttttttcaaattctttCAATAACCTTTTCTACCTTTCTGCTTGCCCTTTTAAATAATTttggaaacacaaacacaatatgtGACTCTTTTTGGAGGGTTTTGAAAGTGTGTAAAGACCATGTGCCATACATAAACAGCCAGCATTTACACtattttgcattattttgtttgtactATATATCTCTTATCAGTATTTTACTGTTATGCATACTTAGTGCTTTTATGGAAACAATGCTATTTTCCTGCAAGGTAGAACACATAATCCTTTTCAAAAGGACtttttgtaaattaaaaaaaaataatttttgtaacaaatccacttttttagttttaatttcTCTCTAATGGTGCTGATTTCAGTTAATAACACCAGCGATGTACCATCTGTTACATAATGTAGAGGACATCATAACGTGATATCATTGTGTATGTACGTATCTTTAGACAAAGATGTTTCTCACATTGAAATTTgaaatgtctgtgtttgttgaaGCACACATTGTAGTCACTTTTGCTTTCTTAGGGTTTCATGTATTGGACAGAAAAACGGCTTAACAAATCCTTAGTTAGCCACACAATTTGATGTCTTGTAAAATGAGAGAAATaataaattattgttttatatatgATGAGCTTTCAAA

Function

GO: NA

KEGG:

id description
K15682 PDZRN3_4, LNX3_4; ligand of Numb protein X 3/4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48455 lncRNA upstream 98786 5694393 ~ 5694946 (+) True G36145
TU48400 lncRNA upstream 353123 5438157 ~ 5440609 (+) True G36114
TU48385 lncRNA upstream 515050 5276453 ~ 5278682 (+) True G36106
TU48384 lncRNA upstream 559141 5234383 ~ 5234591 (+) True G36105
TU48315 lncRNA upstream 738760 5054431 ~ 5054972 (+) True G36054
TU48487 lncRNA downstream 115690 6020853 ~ 6021123 (+) True G36170
TU48492 lncRNA downstream 150081 6055244 ~ 6056226 (+) True G36175
TU48491 lncRNA downstream 201707 6106870 ~ 6107152 (+) False prok2
TU48522 lncRNA downstream 206514 6111677 ~ 6114313 (+) True G36201
TU48543 lncRNA downstream 294620 6199783 ~ 6306143 (+) False foxp1b
XM_039798207.1 mRNA upstream 128679 5610010 ~ 5665053 (+) True cntn3b
XM_039798206.1 mRNA upstream 128679 5616755 ~ 5665053 (+) False cntn3b
XM_039796922.1 mRNA upstream 750255 4956351 ~ 5043477 (+) False LOC120556975
XM_039797502.1 mRNA downstream 52108 5957271 ~ 6013954 (+) True shq1
XM_039797501.1 mRNA downstream 53429 5958592 ~ 6013954 (+) False shq1
XM_039797504.1 mRNA downstream 53429 5958592 ~ 6013954 (+) False shq1
XM_039797503.1 mRNA downstream 53552 5958715 ~ 6013954 (+) False shq1
XM_039797505.1 mRNA downstream 53588 5958751 ~ 6013954 (+) False shq1
XR_005638977.1 other upstream 859568 4911700 ~ 4934164 (+) True cdk5rap1
XR_005638978.1 other upstream 859568 4911700 ~ 4934164 (+) False cdk5rap1
TU48130 other upstream 1208257 4556704 ~ 4585475 (+) False G35921
TU48469 other downstream 15761 5920924 ~ 5924400 (+) True G36156
TU48489 other downstream 129937 6035100 ~ 6052769 (+) False rybpb
TU48651 other downstream 730139 6635302 ~ 6638387 (+) False setmar
TU48863 other downstream 1337046 7242209 ~ 7258950 (+) False G36458
TU49260 other downstream 2322599 8227762 ~ 8228720 (+) True G36744

Expression Profile