RNA id: XM_039797503.1


Basic Information

Item Value
RNA id XM_039797503.1
length 2355
RNA type mRNA
GC content 0.49
exon number 13
gene id shq1
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 5957271 ~ 6013954 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAGCGATATAAACTGTCCATTGCCACCGCATGCATTGAAATAATAAGTAATGGAAGGTCTGTGTGTATTACACCGgcatccataatgataactccGGCGTTTGACCTGAGCCAAGATGCAGAGTACCTGATCCTCAGCATCCGTGTGCCCTACACCAGAACATCCGAATTTGACCTTTACATTGATGGGTCAGATTTCAAGTTCTATGCCAAGCCCTACTTTCTCAGATTATCTCTTCCTGGAAGAATAGTGGAGGATGGCAGAGAAAAGGCCAAATTTGACATTGATAAAGGTCTCGTCACTCTTTGGGTCCCTAAGGAAACCGCTGGAGAGCACTTTGAAGGACTTCAGATGCTGACGAGTCTCCTCGCCCCAAAAGGCTCCCGTTCAGCAAAACCACTGATAGAGGACTTAAGCACAGgcctacttcaatcagGATGCAGTGAAGCTGCGGGGGATGATGAAGATGACGATGAGGAAGAATTTGACTGGCAGGTCGAGCAGGAGGTGTACAAGGAGAGCTctgaggaggagctgagagccCTGCCGAAATATGGCTTTGGTAATCGGCGGTCTGGAGTGTTTGCAAGATTACAGGAGGAACTGAGCGATGTGACTGATATCAAGAACCCAGAAGGAAGGCCAGCGGCCGAGAGGAGGCAGGCACGGCTGGACGCAGAGGCAGCTGCTTTTTCACCTGACCATTACCTGGCTGATTTGTTCGAGGATGAGGAGATAAAGGGGCTGCTGAAGTTCAGGCCCTGGTGGGCCAAACTGAGTCCTTCTACAGAGCAAGAGGGAGAAGCCGCTGTATCATTCAACGACGGTGAGAAGGAGCAGCTGAGAAAATTCACCAACCGTTCCTACCTGCTGGACAAGACGTCCCGTTACCAAGTGTGGCTCAGCCTTGTGGACATCCTGCTGGCTTATTCCTACGAAGTGCGCTCTACAGAGGGAGAGCAcaatGTAGAGTCAGCGTGGACTATCAGAAAACTGAGCGGGACTCTCTGCTGGCTGGAGACGTACAGCTCTTTGCAAGACGTCCTGGTGTCATTTGGACGGAGGGTTTTGTGCTACCCACTCTACAGACACTTTTCCATGGTCTCTGCCGTTGTTCGTGACACAACGAAGATTTTGCAGTCAGGGAAAGCCTGTGTCCTCAAATGCCTGCTGGATATTCACAAAGTGTTCCGAGAGAACGACCCGGCCTACATACTGAATGATCTGTACATCACAGACTACTGCATCTGGATCCAGAGGGTCAAGTCCAAGAAGATGTCAGCCTTGGCTGCGACGTTACAAAAAGCCTCCCTGCAGAAAAAAGACTTGGAGCTGGCACTCGAGGAGCTAGAGCAGGCAGCGGCAATGGTGgcggaggaagaagaaggagagcAGGGAGCCTCGGACTGCAGCAGCGCTTCCAGTGACAGCAGCAGCGACTCGTCCGATGAGAGCGAGGAATCTGAGGCTGAAGGGCAAGGCTGCACCAAATCCAaccagggaggaggaggaggaggaggaggaggaggaggagagatgtcTAAGGACAACCCTCTACAGCCCCAACCCAGCTCGGCTGCCTCTCCCATCCCCCAGGAGCCCACGAGCACGCTCTTTTCAGCGGAGAGGAAGGTGGACGCCCTTCCCTCAGCCTCAGAAGGCTCCAGACAGCTGATCCAGGAGCTGGGGGAACGGGTGGCGGAGGGGCTGAAAATCTCCCAAGGATGCATCTACGAAGCCGAGAGAAAGTGTTCGCAGGCGAACAACGCTGCAGCGAAAACGGAAGCGACGTCCGGGAGGAGCAGCGGTGGGACTTTGTTAGAGCCGAGTCCTCGCAGAAACCCTCTGCTCATCGTCCAATCACAGGAAGATCTCGACCAGAGTGACTTCATCTGCTGATAGACAGTGGTGTGGAAACCTGAAAGACACTTGATATATTTTGAACTGTTGACTGTAAAGTGATTTGAGATGTGTTTGACTATTTGGTTTTTAATGACTTCATTTCTATATGATCTTTAGTGCTTCAACGCTCCTCTAATGGACCATATTGTCTATAAAAAATTATATTCCCTTACTTTATGAATTTGCTAAGCCTCATTTAAATCATTACTTCAAATTGATTTGGTTGTTTAATGATCATACTGATTTTATATGAATTATttctgctcctttttttttttttattatggaaAGTAATTCAACGGTTTGTGAACTAGATTGAGTACACTGACTTCTGCTACTAGTGTAGAACTTCTACTACCCATGTATGTTTCCATACTCATATGAACAAATTCTATATATCCATGTTTGGCTCGAATAAACCAAACCGGAATGCAATTCCAGAAAGCCAACAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48455 lncRNA upstream 263769 5694393 ~ 5694946 (+) True G36145
TU48400 lncRNA upstream 518106 5438157 ~ 5440609 (+) True G36114
TU48385 lncRNA upstream 680033 5276453 ~ 5278682 (+) True G36106
TU48384 lncRNA upstream 724124 5234383 ~ 5234591 (+) True G36105
TU48315 lncRNA upstream 903743 5054431 ~ 5054972 (+) True G36054
TU48487 lncRNA downstream 6899 6020853 ~ 6021123 (+) True G36170
TU48492 lncRNA downstream 41290 6055244 ~ 6056226 (+) True G36175
TU48491 lncRNA downstream 92916 6106870 ~ 6107152 (+) False prok2
TU48522 lncRNA downstream 97723 6111677 ~ 6114313 (+) True G36201
TU48543 lncRNA downstream 185829 6199783 ~ 6306143 (+) False foxp1b
XM_039798002.1 mRNA upstream 53552 5793732 ~ 5905163 (+) True pdzrn3b
XM_039798003.1 mRNA upstream 53552 5793732 ~ 5905163 (+) False pdzrn3b
XM_039798004.1 mRNA upstream 53552 5877464 ~ 5905163 (+) False pdzrn3b
XM_039798207.1 mRNA upstream 293662 5610010 ~ 5665053 (+) True cntn3b
XM_039797791.1 mRNA downstream 21118 6035072 ~ 6055216 (+) True rybpb
XM_039798603.1 mRNA downstream 90659 6104613 ~ 6107146 (+) True prok2
XM_039798765.1 mRNA downstream 104678 6118632 ~ 6132639 (+) True LOC120557997
XM_039797612.1 mRNA downstream 125509 6139463 ~ 6304383 (+) True foxp1b
XM_039796631.1 mRNA downstream 401012 6414966 ~ 6426594 (+) True eevs
TU48469 other upstream 34315 5920924 ~ 5924400 (+) True G36156
XR_005638977.1 other upstream 1024551 4911700 ~ 4934164 (+) True cdk5rap1
XR_005638978.1 other upstream 1024551 4911700 ~ 4934164 (+) False cdk5rap1
TU48133 other upstream 1373240 4556704 ~ 4585475 (+) False G35921
TU48489 other downstream 21146 6035100 ~ 6052769 (+) False rybpb
TU48651 other downstream 621348 6635302 ~ 6638387 (+) False setmar
TU48863 other downstream 1228255 7242209 ~ 7258950 (+) False G36458
TU49260 other downstream 2213808 8227762 ~ 8228720 (+) True G36744
unassigned_transcript_183 other downstream 2603044 8616998 ~ 8617069 (+) True trnae-cuc_4

Expression Profile