RNA id: XM_039797791.1


Basic Information

Item Value
RNA id XM_039797791.1
length 2574
RNA type mRNA
GC content 0.47
exon number 6
gene id rybpb
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 6035072 ~ 6055216 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGTCGCTGTGCCGTGCCTCGAGCCAGCGCTGAGTGGAGCCTGTCTGCCAACAGCTTCAGCAGCGGCTCTATCTGGAACCAACTACACTCACTGACAATTAAAGGAggcccttttttcttcttttttacgaGGACTATTCTTCACCATGGGCGACAAGAAGAGCCCTACCAGGCCAAAAAGACAAGCCAAACAGACTGCTGATGACGGCTACTGGGACTGTAGCGTCTGCACCTTCAGGAACACCGCCGAGGCTTTCAAGTGCAGCATCTGCGATGTGAGGAAGGGCACATCCACAAGGAAACCCAGGATCAACTCCCAGCTGGTTGCCCAGCAGGTGGCTCAGCAGTACCCGATGCCTCCCCCGCCTAAGAAGGAGCGAAGGGAGAGGAGCGAGCGCACAGACAAGGAGCGCCCGGACGGCGAAGGAGAGCGCGCCAACGGCGAGGGACGCCCAGAGGTTGAGCGTCCGGAGATAGCGAGCCCAGAGGGAGAACCTCCTGAGAAGGAAAAGAGCGACAATGAACAGCAGCCAGTCAAAGACAAACCCGACGGAAACGTCCCCCCCGCAgcacagacccccccACATCTGTTTTCCTCTAGACCCAAATCAGACACCCATCAGAGCCCACccagtgacaaacacatacagtctGGCAAATCGGCAACCAAGACCAACAAGAACTCTCACATTTCCAGGCCCAAACTGAAGAACATTGACCGGAGCACCGCCCAGCAGTTGGCCATCACTGTAGGGAACGTGACCGTGATCATAACAGACTTTAAGGAGAAGACCCGCTCCTCCTCCACGTCCTCGTCCACCATCACGTCCAGCGCGGGCTCCGAACAACAGCACCAGAGCTCCGGCTCCGAGAGCATGGACAAGGGCTCGTCGCGGGCCTCCACACCTAAAGGGGATCTCTCAGTGGGGCACGACGAGTCGTTCTGAGGTCCTGTCCCTTTCCTCCTGTCCTCACCCCGCTTCAtcttcccctcctcccccctccttttttttctccaccccccccacccccccacgtTTCTGGACACTATGGATCCCATAGGGGGAGAGATTTCACCTTTCCCATCGCCGCCCTTCCTCCATTCCACGACCACCCCTGAATGCTGAGAGGAGCTGGATGCCTGAGAGGAACAATGTGGTGCGCCTGCCAGAAAACAAAAGcccttctgggggggggggaactccCCTCGTGGTTGCACCCGTGGCACAGGCGAGGAGAGCTGGGCTGCAAGGAATAACCCCCACAACCTCCCCCTGCGGTAGCATCCAGACACTTGTatgtattgttttatatttgtatgtGGATGTGAGGCCAAGTcgacatttgttttgttttttgtaaagaaGAATTTTCCGCTGGGCACAATAACCATCATTTCAATAACTTTAAACTATTATTACCCTTATTTATTACCTGTTGCACCTGTATACTTTGATATTCTACTTTTTATGTTGAAGCTTTTGCTGTGTAGCCCTGCCGATCAATCATTCCTTCAGTGTTTTTATTACAGTTTAAAGATGATAGGACAAGACTCgagacgcgcgcacacacacacacacacacacacacacacacacacacacacacacacacactggtgctAGATACACTGTGAAGCGGTTTTGCAGATCTGGGATTTCCCATTCATTCAATGTGACAGATTGCTGATAAATCAAATTCTCATTCACAATAACACTGTCTTACTCTGAACACTGTCAGGACCTCCATCAGGTCCATCTTGTTCTGTACAGGTCAATGTGCATCAGAAGAAGGGTCACCTGAGGTTCAGACACCTGACTTTTTCAACTAGACTGTCTATGATTTAGTATGCTATAGCAGATCTCTTATACAGTATCTTATGTCCTTAACTGTACAGTGTAGGCTGTTGTGTAAAACACTAAAAGCTGTTGATATTTTCTGCATTCCGTACTTGGATATTGAGTTTTCTGGCTGAAGCTAGAGCTGTTCTCTCAGCTCCTCAGCCAGAGTTTGTTCTGTGGTGACTGAAGGATGGTTACATGCAGTTCCACTTGGTAAAACCATATCGAACTGTAAAATAGACCTGTTGTGTCAAGCTGTTGTAAATCgatttcctttttctttcgTTGTGGTTCTGAAGACAACATTGAATCTTCTTTCTCTCAGCCTGATATCCCAGAAAACAAGTGCAAAGACATGAGGAATTCACAAAGATTGACAATTCAGTTAAagcttagttttttttaaatgaatttaaGACTCCTGTCATTGAAGGCAAAATAATATTGCAGTAGTTAATATAACACAATTGCTCTTTCAATTTTTAGAACAGCAAGGCTTATTTAATGGTTTTAATTCACTTTCACCTTAGCTGATACTAGACCAACATAATTTTCTTTAACTGTATGAAATTGTAAAAAGAATAAATGTGTATATGATATCttagttttatttattgaaGGACCAAAGGAATTTCATAATGACATGATACATAGACAGATACATAACAATTtgaaatgcaattatctaatgtGTGAGATGAATAACAGTTTAAATAAAGACTAATATAATCCA

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11469 RYBP; RING1 and YY1-binding protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48487 lncRNA upstream 13949 6020853 ~ 6021123 (+) True G36170
TU48455 lncRNA upstream 340126 5694393 ~ 5694946 (+) True G36145
TU48400 lncRNA upstream 594463 5438157 ~ 5440609 (+) True G36114
TU48385 lncRNA upstream 756390 5276453 ~ 5278682 (+) True G36106
TU48384 lncRNA upstream 800481 5234383 ~ 5234591 (+) True G36105
TU48492 lncRNA downstream 28 6055244 ~ 6056226 (+) True G36175
TU48491 lncRNA downstream 51654 6106870 ~ 6107152 (+) False prok2
TU48522 lncRNA downstream 56461 6111677 ~ 6114313 (+) True G36201
TU48543 lncRNA downstream 144567 6199783 ~ 6306143 (+) False foxp1b
TU48563 lncRNA downstream 374291 6429507 ~ 6433109 (+) True G36231
XM_039797502.1 mRNA upstream 21118 5957271 ~ 6013954 (+) True shq1
XM_039797501.1 mRNA upstream 21118 5958592 ~ 6013954 (+) False shq1
XM_039797504.1 mRNA upstream 21118 5958592 ~ 6013954 (+) False shq1
XM_039797503.1 mRNA upstream 21118 5958715 ~ 6013954 (+) False shq1
XM_039797505.1 mRNA upstream 21118 5958751 ~ 6013954 (+) False shq1
XM_039798603.1 mRNA downstream 49397 6104613 ~ 6107146 (+) True prok2
XM_039798765.1 mRNA downstream 63416 6118632 ~ 6132639 (+) True LOC120557997
XM_039797612.1 mRNA downstream 84247 6139463 ~ 6304383 (+) True foxp1b
XM_039796631.1 mRNA downstream 359750 6414966 ~ 6426594 (+) True eevs
XM_039796834.1 mRNA downstream 411600 6466816 ~ 6521161 (+) False LOC120556937
TU48469 other upstream 110672 5920924 ~ 5924400 (+) True G36156
XR_005638977.1 other upstream 1100908 4911700 ~ 4934164 (+) True cdk5rap1
XR_005638978.1 other upstream 1100908 4911700 ~ 4934164 (+) False cdk5rap1
TU48133 other upstream 1449597 4556704 ~ 4585475 (+) False G35921
TU48651 other downstream 580086 6635302 ~ 6638387 (+) False setmar
TU48863 other downstream 1186993 7242209 ~ 7258950 (+) False G36458
TU49260 other downstream 2172546 8227762 ~ 8228720 (+) True G36744
unassigned_transcript_183 other downstream 2561782 8616998 ~ 8617069 (+) True trnae-cuc_4
unassigned_transcript_186 other downstream 2586814 8642030 ~ 8642101 (+) True trnae-cuc_5

Expression Profile