RNA id: XM_039798765.1


Basic Information

Item Value
RNA id XM_039798765.1
length 2393
RNA type mRNA
GC content 0.41
exon number 7
gene id LOC120557997
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 6118632 ~ 6132639 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTGACGTTTGTCTTCTGCCCAGTGACGCAGAGACGTCACCAGTCGGTAGGCGGAAAAgcggtagtgtgtgtgtttcgtatCTGGAGATAAAGACTAGCCGGGTGCTTTTATTAAGGAGATACACAAGGAGATATAAAAAGGTTAGCTTTGTGCCTGCTGAAATGGCGGTTCCGGCTGGTCAGCCAGATCTACAGATGGACAGGGGCGCCCTGAGCGGCCAGACGGTTTCCTCTGAAAACAACATTGACATCGACGAGAAAGAGTTGGAAAATATCACAAAGAAACACCGAGAAGACGAGACGACAACGCTGCCTCTGCACTCACCTTGGACGTTTTGGCTGGACAGGTCATTACCGGGCACTACGGCTGCAGAATGTGAATCCAATCTGAAGAAGATCTACACCGTGCAAAGTGTTCAGatgTTCTGGAGTGTATACAACAACATCCCCCCAGCCACAGCCCTGCCTTTGAGATGTAGCTATCACTTAATGCGCGGAGAGCGGAGGCCTCTGTGGGAGGAAGAAAGCAATGCAAAAGGAGGAGTATGGAAGATGAAAATACCAAAAGAAAGCACTTCTGCAGTTTGGAAAGAATTGTTACTTGCCACTATTGGGGAACAGTTTGCAGATTACTGTGCCTCAGACGATGAGGTCGTTGGTGTCAGTGTTAGCGTTCGGGATCGGGAAGATGTCGTACAAGTCTGGAATAGTGATGCATCTCTTGCTAACGAAGCAAATATCTTGGGAAAAGTCTATGAGCTCCTCCCATCCATATCTTTTAAAGCTGTTTTTTATAAGTCTCACATGGAACATCATGCCTTTGAAGGAGGACGCTCAAGACATTAAATTATTGTAatgcacttctttttttttcttttttttttattttaaacctgAACTCTGTACCTGCCTTTAAGGCGCTGTCCACAACCTAATCAAGGatattattttgcattcaaCAATGAAATGTtatcaatatatttttataacttGTTATGACTGATGCCTTGTTTCATTTTGAGGTGGGTCCTAAAGCTCTGAACTCTCGAGAGAATGTATATCCAACATAAATCTCATCCGGAGTTCATTagttcatgttggttttgactTCCTCCTTTtgctgaactgaactgaactgtccTGGTCCTGTTCTCTGCACAGCCTATGGACCTCACAATGTATTCCTGGTATAGAAGTAGCTGCTACAGAACTAGTGTTTTAACTGTTTATGTAGGGTATCTTAATTCATGTCATGTTTATGTTTAATTAAGTCTACTTAGTCAGTGCCAAGGCACTTCTCTGCTGTTTAAGAAGTTTGCATCCCAATGGTGTTTTATACAGCTGGAGTTTTTCCACTTTTGAGGATGAATTGAATGTCCCATTTGGTTTTTTGAAACTTCATCAAGCGTACATCAAATTTAAATCAGGGTAACACTTGGACATATTGCACATGAATACCTATTTTGATCACAGCGTCCCTTAGTTATAAAGCCATCATAGGGAAGAAGACTCTGCTCTAGACTACGTCCAcactaatacatttttaaaaccgTGTTTTTAAAAAACGAAAACGACCTCCGTCCAGATGTTTTACCACCGTTTCGGAAATAATCTCCGTTATAAAATGCAGAATTTAACTGCGCAACAGCTGCAAGCTTAGCCAACAAGGTCAGCAGCGGCTGTAAGTAGTTATCCATGTTGAATTACCCACTGGTAGTCAAGGTTGacgttgtttgttttcttccagaaaAGGGTGACGTGATAGGGGCGTAGCGAATCAGGGAAGGATGTGTGGATGTAGTCTTAGTTAAAGAGCAAAAGCCATCTTGAAAGATGCCTCTTATGAATGTTCTTAACTGCACCGCATTTGACATTTCTTTCGATACCCCATGTTGAAAGTAGCCCCTCTGCTTTCCTATATGGGGTCACAGACTGTATACTGCACATTGTTTGTGACATTTTTATACAATATGTCAAATTTTATCgttatgaaaaagtcaaatatgacAGATTTGGCGAGTTTCAATTCAGTCATTGAGTCAAGTTATACTGCTGCTTCAAAGAAAAGTACACTTTAAACCAGAAGTTACACTGACCTCACCTATTTGATCATGTCCATAATGAGAAATAGCATcactattaataaaaaaaatagaaaaacattttgtaCCAGCTCCTTTTACAAATCTGGGTCATTTTTGTGAGACTTCATCACCCAAACAGTTATGCGATTGCAGTGTAGGCTACAATAAACTGAATGCTTCTGGTATTATTGTATATCAAACCATTTTTATTGTGCAGCTTCGGGCTGGTCGATACGTTAGTTATGAGGGGACAATATTTCCTTTTTGCAGTGATATggacaaagtaaataaaatgtaaatgaaaatactA

Function

GO:

id name namespace
GO:0006413 translational initiation biological_process
GO:0005737 cytoplasm cellular_component
GO:0003743 translation initiation factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48522 lncRNA upstream 4319 6111677 ~ 6114313 (+) True G36201
TU48491 lncRNA upstream 11480 6106870 ~ 6107152 (+) False prok2
TU48492 lncRNA upstream 62406 6055244 ~ 6056226 (+) True G36175
TU48487 lncRNA upstream 97509 6020853 ~ 6021123 (+) True G36170
TU48455 lncRNA upstream 423686 5694393 ~ 5694946 (+) True G36145
TU48543 lncRNA downstream 67144 6199783 ~ 6306143 (+) False foxp1b
TU48563 lncRNA downstream 296868 6429507 ~ 6433109 (+) True G36231
TU48637 lncRNA downstream 410828 6543467 ~ 6544074 (+) True G36288
TU48648 lncRNA downstream 441507 6574146 ~ 6574347 (+) True G36299
XR_005638905.1 lncRNA downstream 446341 6578980 ~ 6581148 (+) False LOC120556885
XM_039798603.1 mRNA upstream 11486 6104613 ~ 6107146 (+) True prok2
XM_039797791.1 mRNA upstream 63416 6035072 ~ 6055216 (+) True rybpb
XM_039797501.1 mRNA upstream 104678 5958592 ~ 6013954 (+) False shq1
XM_039797612.1 mRNA downstream 6824 6139463 ~ 6304383 (+) True foxp1b
XM_039796631.1 mRNA downstream 282327 6414966 ~ 6426594 (+) True eevs
XM_039796834.1 mRNA downstream 334177 6466816 ~ 6521161 (+) False LOC120556937
XM_039796835.1 mRNA downstream 355828 6488467 ~ 6521161 (+) False LOC120556937
XM_039796830.1 mRNA downstream 355831 6488470 ~ 6521161 (+) True LOC120556937
TU48489 other upstream 65863 6035100 ~ 6052769 (+) False rybpb
TU48469 other upstream 194232 5920924 ~ 5924400 (+) True G36156
XR_005638977.1 other upstream 1184468 4911700 ~ 4934164 (+) True cdk5rap1
XR_005638978.1 other upstream 1184468 4911700 ~ 4934164 (+) False cdk5rap1
TU48129 other upstream 1533157 4584239 ~ 4585475 (+) False G35921
TU48651 other downstream 502663 6635302 ~ 6638387 (+) False setmar
TU48863 other downstream 1109570 7242209 ~ 7258950 (+) False G36458
TU49260 other downstream 2095123 8227762 ~ 8228720 (+) True G36744
unassigned_transcript_183 other downstream 2484359 8616998 ~ 8617069 (+) True trnae-cuc_4
unassigned_transcript_186 other downstream 2509391 8642030 ~ 8642101 (+) True trnae-cuc_5

Expression Profile