LOC120557301


Basic Information

Item Value
gene id LOC120557301
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 7225630 ~ 7232470 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005638955.1
GTGGATACCTCAGAGCCATCATCCGCTTCTTTGCCAAAGAGTTGCATGATACATGAACGGAACTgatgaggaaaaaataaaacgGCTACCTGACTCGCACATTTGACAAGAACTCCATGTCGGACAAGGACTGCACATCAAGAAGAGGATGGATCCTGAAACTAAAGAAATCTGtaaacttttcttcttttttcctttatttcccAATATGTCTTAAATAATATTAGTGCATAACTGAATTTCTATTATTGTTTACGAAGTAATACTGATAAGTAATGTCTTTGGGGAGAGTGTTTTGCTTTCTGTATcttaatatatatttacatgGATGCTGTGATGTTTCGATAGGTAGGTCTGGAATAATGGACTTATTGCCATTGTGGTCCTTATAAGGGCAGGGGGAGAGGAGTGTAGGTGTAGGTGTAGTGAGGTAGTGTTTTGAGGCCGTAagggccggtctgataatagttatacattgcaagttcttagcaacaccatccggtGGCTGCCCGTtggtcaaactgtgcagcctccGCTCAACCCGTACGGCGGGCCGCAGCAGCCACTTATTTCAATACCTACTTAAACACAGGCTAATCAGAAAGCACTAACGAAATGCTGATCACAACCATGTCTAGGATTTTTAGAAATATAGAGGCGATCAGTGAGCGGCCCCTCCCCAAATGGCCTAGCCCTGGTCGGCCTATGACGTAAAGCCATCGgacctcttttttttcctcgtcACGTTTGGAAGTGTGGTAGCCTAAAgttaacagacagtgtgtgagtctaatgatggaaagccaaaaaagaaaagggaaaggtaGCCCTAAGAAGGTCAgactcaaaaggaaaaaaatattatgGAGGAGGAGGCAGCGAAATGCTCCAAAATAACGGACATGTTCCGGGCAACAGTAAAGATACTACAGGTGCAATAAGATAACTTTGCTAAGCacctacactcacctaaaggattatgaGGAACGCCTGTTAAATTgatcgttaatgcaattatctaatcaaccaatcggCAGCTGCTttaatgcatttaggggtgtgcaCCTAATGTCACAGCTAAGCACAGATGGGAATTAGCACCAGCTACCAGCCAGCCAAAAGCTTGTGAAATTTGAAAGTAGTTTGTGGTAAATAGCAGgtaaaacacattattaaaacacaaatattgCCTTATGATAACATAATGACTATTGAAACGAATTGGAAGTCAATAATGACTAATCCAATGCTGAAATTAATGTtcgaattttttttattaatgttttggCCAACTTAAGCAACATCTCCCTTCTCACATGTAACAACGAAATGCTTTTGTCACGATTTTCTATTTGATTTTATTGGTTTGCACACATTCATAGAAAACAATACATCACAAACATGCCCGGATTATCCATAAGGGCACTTGGGCcagtgcccaggggcaccaaccattcacaaccagtggggggggcaccacatgacacaagctttaacaatgttttctgtaaattgttatattattcaATTGAAATTGTTGAAAGACCATACATTACTCATTTATGAACactaatttattaataataataataataataataataataataataataataataaataaataaatcaatattacatGACAACTATCACTCCCCTCCCCAATCTGTCAGAGTAGAGTTGGTCCACAAGTACCTGCAAATGTATCATCtgagggatggggggggggggttaacaaTAATCAAAAGTGGACAGTTTAACCCCCCCAGTTTATCATAATGATGAATGTAATAAACAATGATAAGTGGTTGGCTTTCTTGATTCAATGTAATTGGCAAGCAAATAAAACCATTTTTCACACAAACCCCCCCACCTATGGGTGAGACTTGGTTGCGCCCAACCCTTCTCGTATTTCAGCACGGTGCGCTTTGTGAGTTAATTCAGTAAGCAGAGAAGTATAAAAGACCGGTCCGCTGACAGTCTGCGCTTCTTTTCCTAGAACTCGTATTTCTTTCAGAAGACTTTGTGCAATATATCCATATTCTTAGATCTAATAGGCCTATTGATAATCTTTTGTCTATATCTTATTCGTTAGCTGTGATGCTAAAGCAGTTTTAcctttcccatgatgcttttgAAAGTTTTGCCCAATCAGAGGAGTTGCTTTCAGGGCCCGTGAAATAAAGTCGGAAAAATACAGATTTGACCGACCCACAATGCTGCAATATATAGTATTGATTTTGGCTTTTTGAATTGATAGACATTTTGAATAAGttagtaaattacatttgagaaatCCCCTTGATTATGTCTGATGTTCTTGGCAGGGGGAAAGCAATAGTTGGTTTCTCTTGGCATAAtgaaaatgctttgtttttttttgcttgactGCTGGGCTGATGTACTGATGTGTattgatttttacattttgaattgagacATTTGAATATAGTGCTCACTGCTCATATGCCTACATGTATGTAGTTGGACAAGttagtaaattacatttgagaaat

Function

GO:

id name namespace
GO:0004112 cyclic-nucleotide phosphodiesterase activity molecular_function
GO:0004114 3',5'-cyclic-nucleotide phosphodiesterase activity molecular_function
GO:0008081 phosphoric diester hydrolase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005638955.1 True 2519 lncRNA 0.39 2 7225630 7232470

Neighbor

gene id symbol gene type direction distance location
LOC120557474 traip coding upstream 134878 7082265 ~ 7090752 (+)
sema3fb LOC103371090,LOC104933620 coding upstream 284018 6882145 ~ 6941612 (+)
arl8bb arl8b,arl8a,LOC107095653,LOC105934196,LOC106565753,LOC103355426 coding upstream 439363 6775726 ~ 6786267 (+)
LOC120556653 naaa coding upstream 455355 6767012 ~ 6770275 (+)
bhlhe40 bhlhe40,LOC104959416 coding upstream 465148 6756944 ~ 6760482 (+)
gata1a LOC100696076,LOC102798593,LOC101485806,LOC102310803 coding downstream 80264 7312734 ~ 7317082 (+)
mafbb mafb,LOC104945735 coding downstream 102996 7335466 ~ 7337312 (+)
si:ch211-232b12.5 LOC104939380,LOC103365892,LOC100697406,LOC102796719 coding downstream 129470 7361940 ~ 7377650 (+)
snai1a LOC104939346,LOC103358824,LOC108244374,LOC107385873 coding downstream 180319 7412789 ~ 7416280 (+)
myh7ba LOC103358826,LOC104966023,LOC101480568,LOC102289245 coding downstream 201740 7434210 ~ 7449018 (+)
G36450 tfe3,LOC103365907,LOC104939489 non-coding upstream 33140 7192016 ~ 7192490 (+)
G36431 mbd1 non-coding upstream 71135 7152803 ~ 7154495 (+)
G36426 NA non-coding upstream 76939 7147991 ~ 7148691 (+)
G36424 NA non-coding upstream 78580 7146117 ~ 7147050 (+)
G36412 NA non-coding upstream 100002 7124942 ~ 7125628 (+)
LOC120557300 NA non-coding downstream 9892 7242362 ~ 7258077 (+)
G36469 NA non-coding downstream 39984 7272454 ~ 7272800 (+)
G36470 NA non-coding downstream 40611 7273081 ~ 7273879 (+)
LOC120557355 NA non-coding downstream 96825 7329295 ~ 7330628 (+)
G36485 NA non-coding downstream 125281 7357751 ~ 7359732 (+)
si:dkey-245f22.3 NA other upstream 38416 7183199 ~ 7187214 (+)
setmar LOC100698471 other upstream 587107 6635280 ~ 6638523 (+)
foxp1b foxp1 other upstream 919487 6139463 ~ 6306143 (+)
prok2 prok2,LOC103355444 other upstream 1118478 6104613 ~ 6107152 (+)
rybpb rybp other upstream 1170414 6035072 ~ 6055216 (+)
hcfc1a hcfc1,LOC102799381,LOC102206223 other downstream 56437 7288907 ~ 7306343 (+)
G36744 NA other downstream 995292 8227762 ~ 8228720 (+)
prickle2b prickle2 other downstream 2527763 9760233 ~ 9856656 (+)
G37197 NA other downstream 3072717 10305187 ~ 10309996 (+)
glrx glrx other downstream 3155438 10387908 ~ 10396187 (+)

Expression


Co-expression Network