RNA id: TU49149


Basic Information

Item Value
RNA id TU49149
length 1168
lncRNA type read_through
GC content 0.39
exon number 2
gene id G36649
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 7699642 ~ 7752637 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gggggggggagggggGTACATGAACACTATTTGACATTTTAGCCACAGATTTTAGACAATTGTTTTAGGCTGTCAAACTGATGAGCAATACTTAAAAATCTCCAAAAGTATCCACACCAAAACAAGTACATTACAATTGCATATTTATGATTTAAACATATTTACCCAGTTCAAAATATTGCAACTTTGTTTATGAAAGTCAAACCAAACTGGATAAAAGAATAAAGGTTTTGAAACTGAACtgtgaacacaaacaaacatttgcataaataactgctgtaaaaaaaaaaaaaaaaagtaaacaaattGTGGATGGTGCTTTACCAGCTCCAACTAATCTCAGTGCAACATTTTAGGGAACACCATTTTGATGTCTGTGAAGTTTCATTGGCATTACAAAGTTGCAGTTTGATTGACAACTAACCTCACACCACTCACCTCCTGTTCCTGACTATGACGATAAGTATGTACTACATAATGTGTAGTATAGTAACCATTAGTATGTAGAATGGATTTGGAGCACAGTGACAAATTATGCTTTGGCAGCTTAATTTGCCTGGTCTTTGGCTTCATCTTCCTTATCCAGACTCAAATACTCACAAGCCTCTTTATTGCCATTTTGTGGCTTTGACGCCGACTGCCGTGACCACATCATCTGAATTTTCTTCGGGCACCACACAAACTCATCTTTACGGTCATAGTTCAAATAGGCAAACTTGAGGAGACTCCTGCGTTGTTTCTTATCAAGGACGGCAAACACAAAGTAGTTTAGAACGCTGTCCTTGACATTTGGGAGTTCTTTGCGGACGAGAGTCTCCTCCAGGAAGAAGCGAACCAGGGGGGCTTGGTAGTGAGGATACCCCAGGGTTCCCTGGCACTTCAGGATGCGGGTGATGCGCAGGTTGTTATGAGTGTGACTGTCAAATACAAACagtaaaaaggcaaaaaaataaaaataaaacagacagatggtttttattacttttagtGAACAATACGTTATTAAAATTCAGAGATCACCTGTTGAGGTTATCAAATCTGTCTTTCCAGTTTGATGCTCTCTCGACTTCTCCTGTGTTTTCATCACACAACCTGATACCATAGAAGTCCAACATGAGCTTGTACGACTCCAATAGATTGGCCTTCGCGGTGCTGTTTTGGCAAAACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49116 lncRNA upstream 35768 7662944 ~ 7663874 (+) True G36638
TU49087 lncRNA upstream 152607 7543986 ~ 7547035 (+) False G36616
TU49086 lncRNA upstream 153592 7543986 ~ 7546050 (+) True G36616
TU49078 lncRNA upstream 167439 7531717 ~ 7532203 (+) True G36609
TU49073 lncRNA upstream 173679 7521180 ~ 7525963 (+) True G36604
TU49242 lncRNA downstream 391904 8144541 ~ 8146263 (+) True G36727
TU49243 lncRNA downstream 395290 8147927 ~ 8148229 (+) True G36728
TU49261 lncRNA downstream 471621 8224258 ~ 8224772 (+) True G36745
TU49270 lncRNA downstream 486826 8239463 ~ 8241892 (+) True G36754
TU49271 lncRNA downstream 486826 8239463 ~ 8244446 (+) False G36754
XM_039799188.1 mRNA upstream 250624 7434210 ~ 7449018 (+) True myh7ba
XM_039799189.1 mRNA upstream 250624 7434618 ~ 7449018 (+) False myh7ba
XM_039799190.1 mRNA upstream 250624 7435874 ~ 7449018 (+) False myh7ba
XM_039799192.1 mRNA upstream 252922 7434210 ~ 7446720 (+) False myh7ba
XM_039799119.1 mRNA upstream 283362 7412789 ~ 7416280 (+) True snai1a
XM_039797588.1 mRNA downstream 10251 7762888 ~ 7769742 (+) True LOC120557341
XM_039798604.1 mRNA downstream 133115 7885752 ~ 8116031 (+) True cdh4
XM_039798605.1 mRNA downstream 133115 7885752 ~ 8116031 (+) False cdh4
XM_039798063.1 mRNA downstream 387597 8140234 ~ 8142947 (+) True LOC120557574
XM_039796679.1 mRNA downstream 418045 8170682 ~ 8177048 (+) True LOC120556871
TU48863 other upstream 440692 7242209 ~ 7258950 (+) False G36458
TU48651 other upstream 1061255 6635302 ~ 6638387 (+) False setmar
TU48489 other upstream 1646873 6035100 ~ 6052769 (+) False rybpb
TU48469 other upstream 1775242 5920924 ~ 5924400 (+) True G36156
XR_005638978.1 other upstream 2765478 4911700 ~ 4934164 (+) False cdk5rap1
TU49260 other downstream 475125 8227762 ~ 8228720 (+) True G36744
unassigned_transcript_183 other downstream 864361 8616998 ~ 8617069 (+) True trnae-cuc_4
unassigned_transcript_186 other downstream 889393 8642030 ~ 8642101 (+) True trnae-cuc_5
unassigned_transcript_189 other downstream 958372 8711009 ~ 8711080 (+) True trnae-cuc_6
unassigned_transcript_190 other downstream 986330 8738967 ~ 8739038 (+) True trnae-cuc_7

Expression Profile