LOC120557341 (LOC106565946)


Basic Information

Item Value
gene id LOC120557341
gene name LOC106565946
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 7762888 ~ 7769742 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039797588.1
TTGGTGCCATTTCACCTGATGACGAGCCAACAGAACGGGCTACAGTTTCAGCACCCAACCTATTTTGGTCGTATGCTGTAATCCTAGCAGGCTAAAAAGGGGGGCCTCAACACATCACCAAAGATGTATGGAGTTGATGGAGGATGATCATGTGTGCGTCCGTACCTCTGagcagcggcggcggcggcggcggcggcggcaccctccctccctccctccgctCCGCGCGCACTCCGGAGTTGAGGATGAAGACGCAGAACATCAGGaccctctctctcatcctctcCATTGTTTTCTACCTGCTCATAGGGGCCGTCGTCTTTGACGCACTGGAGTCGGACAGCGAGAATTCAAGGGAAAGGGCGCTGGAGCAGAAGCTGAACGAGCTGAAGAACAAGTACGACTTCACCGACGATGACTACAGAGAGATTGAGCGCGTGGTCCTCCAGTCGGAGCCGCACCGCGCCGGGAGTCAGTGGAAGTTCGCCGGCTCTTTTTATTTCGCCATCACTGTTATCACCACAATTGGTTATGGCCACGCTGCTCCACGCACTGATGCTGGCAAGGCCTTCTGTATGTTTTACGCTGTGTTGGGCATTCCTCTGACACTGGTAATGTTCCAGAGCCTGGGCGAGAGGATCAACACTTTTGTCCGCTGCCTCCTGCGCAGAGCCAAGCAGGGCCTGGGTTTACGGAAGACGGAGGTGTCCATGTGGAACATGGTGCTGGTGGGTCTGCTGTCGTGCACGAGCACCCTGTGTATCGGAGCTGCAGCTTTCTCCCATTTTGAGGACTGGACCTTCTTTAATGCCTACTACTACTGCTTCATCACGCTCACCACCATTGGATTTGGGGATTTTGTGGCTCTGCAGAAGACAGACGCTCTGCAGAAACGGCCCCCCTACGTGGCATTTAGCTTCATGTACATTTTGGTTGGGCTGACAGTCATCGGGGCTTTTCTTAACCTGGTGGTCCTGAGGTTTCTCACTGTCAGCACTGAGGAGCCTGACTTGAGGCCTGAGGCCAGGGTAGAGGAGCTGGGAACGCAGCCTAAGGACACGCAGGGGGATAGGGAGGTGTCGGAGGCAGAAGCAGAAAGTGCTGATGATAGCTTTAAAGAGCGCAGAGATGGACACAGCAGCCTGTGCAACCTGAGCCTTCCCATGGAGGGGGGCACCAGCTGTATGgatctcctcccctctcctgtAGAGGAGCGCAGACTTGTGTTATCTGAGCACTCAAAGCTTTCCGAACCCAGCAGACTCAGGGCCTTGTTTTCCTGCATGTGTTGTGGCCTGGACATTTACGACAGCTCCTCTCTGCCTCACCGTGACCAGGCGGGCGGCCACAGCAACCCCGTCTTTTACAACTCCATCTCCTACAGGGTGGACCAGGCCTCGTGCAGCTCCTGCCCCGTGTCGTCACAGGCCTCCCCCAGCAGCATAGCTCTCTGTCTGGGCAAGAACAATTCTCACACCAGGAGGAAGTCGTTATAACTCTCTGCACCTTTGACCTAGTGGCCTTTGTTTTGGACTTTTTGTACACACCACAGAACCCTCTGATTTTCCTCTTGGTGGAACAAACTGCTCAGTGCTTTCCTTGTCATGAATGTAGCAATACTTGCTACTGGAAAACATTGTAGCATACCATAAGCATCCTTTACAGtttataatgtatttttctacaataaataTTACCGCTAAAGAGAA

Function

NR:

description
PREDICTED: potassium channel subfamily K member 15-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039797588.1 True 1709 mRNA 0.54 2 7762888 7769742

Neighbor

gene id symbol gene type direction distance location
LOC120557338 NA coding upstream 11768 7728149 ~ 7751120 (+)
zmynd8 LOC103358838 coding upstream 35570 7709966 ~ 7727318 (+)
myh7ba LOC103358826,LOC104966023,LOC101480568,LOC102289245 coding upstream 313870 7434210 ~ 7449018 (+)
snai1a LOC104939346,LOC103358824,LOC108244374,LOC107385873 coding upstream 346608 7412789 ~ 7416280 (+)
si:ch211-232b12.5 LOC104939380,LOC103365892,LOC100697406,LOC102796719 coding upstream 385238 7361940 ~ 7377650 (+)
cdh4 LOC102194679,LOC102298797,LOC100702438 coding downstream 116010 7885752 ~ 8116031 (+)
LOC120557574 LOC104939084,LOC103365882 coding downstream 370492 8140234 ~ 8142947 (+)
LOC120556871 NA coding downstream 400940 8170682 ~ 8177048 (+)
rae1 rae1 coding downstream 421961 8191703 ~ 8200687 (+)
LOC120557172 rbm38,LOC104939027,LOC101475440,LOC103365886,LOC107102025,LOC107384941 coding downstream 432538 8202280 ~ 8212838 (+)
G36649 LOC104950789,LOC103358841 non-coding upstream 10251 7699642 ~ 7752637 (+)
G36638 NA non-coding upstream 99014 7662944 ~ 7663874 (+)
G36616 LOC103386327,LOC105417874 non-coding upstream 215853 7543986 ~ 7547035 (+)
G36609 NA non-coding upstream 230685 7531717 ~ 7532203 (+)
G36604 NA non-coding upstream 236925 7521180 ~ 7525963 (+)
G36727 NA non-coding downstream 374799 8144541 ~ 8146263 (+)
G36728 NA non-coding downstream 378185 8147927 ~ 8148229 (+)
G36745 NA non-coding downstream 454516 8224258 ~ 8224772 (+)
G36754 NA non-coding downstream 469721 8239463 ~ 8244446 (+)
G36820 NA non-coding downstream 635502 8405244 ~ 8407693 (+)
hcfc1a hcfc1,LOC102799381,LOC102206223 other upstream 456545 7288907 ~ 7306343 (+)
G36458 LOC100304472,LOC107385856 other upstream 490520 7209996 ~ 7272368 (+)
si:dkey-245f22.3 NA other upstream 575674 7183199 ~ 7187214 (+)
setmar LOC100698471 other upstream 1124365 6635280 ~ 6638523 (+)
foxp1b foxp1 other upstream 1456745 6139463 ~ 6306143 (+)
G36744 NA other downstream 458020 8227762 ~ 8228720 (+)
prickle2b prickle2 other downstream 1990491 9760233 ~ 9856656 (+)
G37197 NA other downstream 2535445 10305187 ~ 10309996 (+)
glrx glrx other downstream 2618166 10387908 ~ 10396187 (+)
G37397 LOC102299939,LOC103353648,LOC103366902,LOC102208776,LOC100700987,LOC104921056 other downstream 3227488 10997230 ~ 11012909 (+)

Expression


Co-expression Network