RNA id: TU49087


Basic Information

Item Value
RNA id TU49087
length 1916
lncRNA type inter_gene
GC content 0.42
exon number 4
gene id G36616
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 7543986 ~ 7547035 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TACAATTGAACAAATCTTTATTTATGGACAGTCATTCCACATAACAAGTaggtatgcaaacacacatatacacacacacacacacacacacacacacacacacacagacacggaaaGTGGTTTGAATCAGTCCTATGTTCAAAAGGCAGGCGGTTACAGCAGAGAAATGAACAGTCAATTACATAAACACCTTTTATTGCTCTTTACAGCAACATTTAACTTCACCCTTAACCTGGATCACTAGAACACACTTAAGCAGAGTTAATACTATTTACACGCAGAATTTATTTACATGGTCAAAGCCTGAGAGGGGAGACAAAAAGCTTAATCTACATTCTCATAGTGCTTGACAGTTGAACATAATCCATTCTCATTACAGGGGTTTGTGTTAGATTAATCAAATTTTCAGTCTGTGAGGGAGGCCGTGTACAGTTATCACATCCAACACCCGTTTTATCATAAGACCtgagccaaaaaaaacaaaacatacagaCCACAAACAAAAGAGAACACAATTCCGATTGAAAGCCTTTTTATAGATAAAAGAGAACGAGTATTACCAACCTCCAACATCCCTGTGACATAAACTGTAATTACAACACTCTCGTCTGGCTTCACTTGTGTTTAAAGGTTGTAAAATCAAAGCACTTTCTACGTTTATTTTCTTAGAAAATCGCCACCATCCGTTATAAAGAGCTTTCTGCACATCCTTCCAGTTTGTGCTTTAAAATGAAGGCTCTGTACTCAGAATAGTTGTGGTGGTGCGGCTTCTTGTGTCTCGTAAAAATGAAATACGAGGAGACCAGCGTTCAGTACAACTACTCAAAACAGCACAGGCAAGCTTATTAGTAAGACACCATTACAATAGTTCTGtaactttttttaatattttctgtACATGATAAAAGAAGGGTGtctttcattcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacatgaatgaaACCAGAATGTCAACGCTGCTGTCtttatgttttgttgtgcaAGTAAAGTAAATACTGTAAGATTCTCCCTTTACACAACGCAGTTGTTCTATGAAACTGTAGTACTACCCATTTAGTAAGAAACAAGAGTAAATCTGTTTTCACATGCAGCGGTTAGAAAATACGGTCATTAAAGTGAGCCACTTTAAATCCGTCACTGTTGATGTTAGTATCAAAAAACACAGTGGAGCCTAAGGTGTCTTGTCTCTCGGTAAGAAAGCAAGTGAAAACGAGGGTCCAAAGTCCAAGCTGCTCTCACACTGCTTGTGTTGTAAGAGGTGTAATATCTCACCTGAAGAGTTTCCAGTGTGGTCTGAACAGAAAGTGTTTATGCACGATTGTAAATGTGTAACTGGAGATGCTGATTCAGCACTTGAGGGTGGGCTCTGCGCTCGGTTTACAGTGTCTACACCACCCCTTCGATGAAACTGGTTTCCAGGTGAACAATTAGCATTCTCAGGAAGGACATCTCCTTGCGCGTGTTTTCGAAGATGACCCGTGGATCGTCGGATTGGCACCGGAGGCAGTTAGGTGCCATCACCATCGCCAGGTTGTTCACATCCATCTTGGTTATAGCCACGTTGGATGGCTGAGCAAACACCTAGAAAGTGGATGAAGTAGCAGAGCACCAGCCTGTTGAGCTCAGGCAGAGACTGAACCACAGCGATGGCCGCCACTGGGTCGTCACAGTTACTGACACACTGCTTGTAGAAGTTCATTGGGATGAGAGGTTCCTCCAGCTCCCGATACCACAGCTTCATTAGAGAGGCTGAACGAGACAAACGTACCCTTAGTTTTCACATTCACACCCAACACATACATGCAGACAAACGACAACAAACAAGCCAAATAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49078 lncRNA upstream 11783 7531717 ~ 7532203 (+) True G36609
TU49073 lncRNA upstream 18023 7521180 ~ 7525963 (+) True G36604
TU49029 lncRNA upstream 25720 7487896 ~ 7518266 (+) True G36568
TU49021 lncRNA upstream 64607 7476134 ~ 7479379 (+) False G36563
TU49116 lncRNA downstream 115909 7662944 ~ 7663874 (+) True G36638
TU49149 lncRNA downstream 152607 7699642 ~ 7752637 (+) True G36649
TU49242 lncRNA downstream 597506 8144541 ~ 8146263 (+) True G36727
TU49243 lncRNA downstream 600892 8147927 ~ 8148229 (+) True G36728
TU49261 lncRNA downstream 677223 8224258 ~ 8224772 (+) True G36745
XM_039799188.1 mRNA upstream 94968 7434210 ~ 7449018 (+) True myh7ba
XM_039799189.1 mRNA upstream 94968 7434618 ~ 7449018 (+) False myh7ba
XM_039799190.1 mRNA upstream 94968 7435874 ~ 7449018 (+) False myh7ba
XM_039799192.1 mRNA upstream 97266 7434210 ~ 7446720 (+) False myh7ba
XM_039799119.1 mRNA upstream 127706 7412789 ~ 7416280 (+) True snai1a
XM_039797580.1 mRNA downstream 162931 7709966 ~ 7727318 (+) False zmynd8
XM_039797578.1 mRNA downstream 162931 7709966 ~ 7727318 (+) False zmynd8
XM_039797582.1 mRNA downstream 162931 7709966 ~ 7727318 (+) False zmynd8
XM_039797587.1 mRNA downstream 162931 7709966 ~ 7726632 (+) False zmynd8
XM_039797581.1 mRNA downstream 162932 7709967 ~ 7727318 (+) False zmynd8
TU48863 other upstream 285036 7242209 ~ 7258950 (+) False G36458
TU48651 other upstream 905599 6635302 ~ 6638387 (+) False setmar
TU48489 other upstream 1491217 6035100 ~ 6052769 (+) False rybpb
TU48469 other upstream 1619586 5920924 ~ 5924400 (+) True G36156
XR_005638978.1 other upstream 2609822 4911700 ~ 4934164 (+) False cdk5rap1
TU49260 other downstream 680727 8227762 ~ 8228720 (+) True G36744
unassigned_transcript_183 other downstream 1069963 8616998 ~ 8617069 (+) True trnae-cuc_4
unassigned_transcript_186 other downstream 1094995 8642030 ~ 8642101 (+) True trnae-cuc_5
unassigned_transcript_189 other downstream 1163974 8711009 ~ 8711080 (+) True trnae-cuc_6
unassigned_transcript_190 other downstream 1191932 8738967 ~ 8739038 (+) True trnae-cuc_7

Expression Profile