RNA id: XM_039798872.1


Basic Information

Item Value
RNA id XM_039798872.1
length 2924
RNA type mRNA
GC content 0.49
exon number 10
gene id si:dkey-202e22.2
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 8329315 ~ 8334854 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGGACCTTGCTGGGACACGGAGCTCTCAGGTTGGCTGTGAATTAATGAAAAACCTTTACATGAATTAATTAGCTTTGAGAAGGACCTATCCTTTGCATCGTTTAGGCTAACACACAGTCACTTTTTTTATCGCGCAAAATCGATGAAGACAAGACACCAGGAAATTGGAAACATTTCGTTATGTCAAATATGGAGCGTTCATTCTTGGGCTAACCAATAATCCATTTGCTGCTACGGGGGAACACAGTCCACTTTTGTCAGAGAGATGCCCTGGCTGTTCCTGAGAATGCTTTGAACTTTATAAAAGATTCTTTTAACATTGTTCCTGGAAGGGCATCGGAAGAATACTCCTGGAATCATCTGCACACTTTGCGCATTGCGTAATTGGCAGGGAAATATGCGCTTGTCCGTTAGGAAGGCTACACATAATGTTGGGACTAATCTCTGCTGGAAGGCGTTTATCGCACCACGTTTGTTGTAAACACAGCAGAAACAAGGATGAGAGTGTTTAGTATGCGTGGGAAAGGTCGGCATCAGATGCTGCTGGCGCTCTGTTGGCTGTTTTTGGTTCTTATGAGGAGCGGAGCAGTTTCCAGATGTGTGGACCATGCCTGTAGTCCACCAATTGGGAACCTGGCTAGTGGCAGGACCATCCTCACCCACTCAAGCTGCTGTGGGAACAGCTCCTTCCCACGCAGCCCTTGCCCCCATCCTCCTGTAACCCCCCACCTCCTCTGCCCCGAGGACACCCACCCATCTGCTCACATGACTGATGACCCTTTCTTGCATCCAGATACCTGGTGGGCATCAGGTGCAGGCACCACCATGCAGGAGCAGCAGGATGAGATCCGCTTGGACCTTGAAGCACAATTCTGTCTGTCCCATGTAGTTTTAGTGTTCAGGTCACCACGGCCTGCTGCCATGGCCATTGAGCGTTCAGCTGACTTTGGAAAGACCTGGGAAGCTCTTAAGCTCTTTGCACACAATTGCAGCATGGAGTTTGGTTTGCCTGATGATTTTACTCAGCCAGGGTCTTTGTGTACATCCCGTTATACCagtgctacaccctgcagtgggGGGGAGGTAATATTACGGACACTAGACCCTAGCAGTGCTAAAACACTGGACCCTTACAGTCCAGAGGCCCTCGCCCGCCTCACACTCACTAACCTCCGCATCAGACTGCTAAAAGCTCAGACTTGTCCGGCACCTCTAAATCCACCTGCAGAATGGACAAGCCCCACGGCCTCAGCTCTGACTTCCACATCCTCCACAGAAAGCTCAGCCTCCGCACCTTATGCTATTTATACTTTACTGGCCAGAGGGACCTGCCTGTGCCATGGACATGCTGAGCATTGTGTACCATACAACAGCAGCCAAGACACAAGACAGGACAGTAACATGGTGTCTGGTAGGTGCCTATGTACTCACCACACAGCAGGAAATCACTGTGAGAAGTGTGCCCCGCTCTACAATGATCGTCCCTGGAGGCCTGCCAACAGCAACAGTGGGGAGTCCAACCCATGCCAGAAGTGCCAGTGCCACGGTCACGCAGATAGCTGTCACTTCTCTCAGCGGGCATGGCTTTCCTCCGGCGGCACCAGTGGGGGCGTTTGTGATGACTGCAGACACAACACTGTCGGGCGCAGGTGCCAACGCTGTCGCCACGGCTACCACCACCACCCATCCCTGCCCCTTAACTCcccccacacatgcacacGCTGCTGGTGTGATCCACAGGGCTCTTTGCCTCCTCGTCCTGGAGAGGAGAGACCCTGGTGCCACCCTAGAAGCGGGCAGTGCCACTGCAAATCTGGTGTAGGCGGCACAAGCTGCAGACACTGCCTGCCTGGCTATTGGGGTTTTGGAGAGGAGGGCTGTAAACCCTGCACTTGCACACACAGCTGTGATCCAACCACTGGGCAGTGTCTGGACAGTTACTCAAATAACCAGGTGTTCAATGTGCCCATTGGTGGAAAGATCCCTGATCTGGATCACATGTTCACAGTAGAAGAAGAGGTACAGTGGTCAAAGGAGCTTGCCGTCTCTGCGCTGCATTACACAGGAAAGTGTAGCTGTAAGCAGAAAAAGCTGAGAAGTGTGTCTGACCTCTGTAAGACCAAACATGATTATGTGATCAAAGCCATTGTGCTGTCTGCTCATGACAAAGGCAGCCACGCAGAAGTGCAGGTCAAAGTTCGCAAGGTCCTTCGATCAAGCCAAGTGGCTCTCTACTTGGGAACCATCCGCATCTATCCACTGCCGTGGACCAGCCGCGGCTGCACCTGTCCTATTCTCAACCCAGgtaTGGAGTACCTGCTGGCAGGCCCAGAGGAGGCTGGGACAGGCCGTCTACTGGTCACCATGCAGAGTGTGGTGGTCCCATGGACACCCCGACTTGGTCTACTTATATCAGAGAGCCTGAGGACTGGATGCACATGAACATAAACCCAAAAAGGCAGGACAGACTTCAGAGGATTTCTCAAGAAAATTtgagtggaaaaaaaatcagaaaatggACTGAAAACCGCTGGACAACATGCTTTATCACCAGGAGGAAATTATCCAAACTCATGATCAGTCCAGGTCACAACATTGAAGAAAGGTACTCACGACGTGTGAGTGTGCAACACAAAATAAAGACTAAAATGAATACCTGGATTTGTTAAGATCTGAGTTTAACAAATCTCTTATTCAATGTTTACCTCCTCTTTATTAGCAAAGAGAAATGTACAAAAGATTAAGGTAGTCGTATATAGAAAATATGTGACGGGGCAAAGTTCTTTGAATTTCAGATGGTTTCTAAAATATTTATTACTTCTTTCATAAATAGTAAgtataatacattttgaaagCCAAATATAATTTGGATTCAATAAAATGCTATGAAACTATCATTACTAATAAACAGGCAATATAACAAA

Function

GO:

id name namespace
GO:0005576 extracellular region cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49271 lncRNA upstream 84869 8239463 ~ 8244446 (+) False G36754
TU49270 lncRNA upstream 87423 8239463 ~ 8241892 (+) True G36754
TU49261 lncRNA upstream 104543 8224258 ~ 8224772 (+) True G36745
TU49243 lncRNA upstream 181086 8147927 ~ 8148229 (+) True G36728
TU49242 lncRNA upstream 183052 8144541 ~ 8146263 (+) True G36727
TU49352 lncRNA downstream 70390 8405244 ~ 8407693 (+) True G36820
TU49358 lncRNA downstream 83450 8418304 ~ 8419581 (+) True G36826
TU49365 lncRNA downstream 87319 8422173 ~ 8425531 (+) True G36827
TU49374 lncRNA downstream 110538 8445392 ~ 8445591 (+) True G36836
TU49447 lncRNA downstream 275507 8610361 ~ 8611088 (+) True G36887
XM_039798532.1 mRNA upstream 92666 8233082 ~ 8236649 (+) True arpc4l
XM_039797256.1 mRNA upstream 116477 8202280 ~ 8212838 (+) False LOC120557172
XM_039797257.1 mRNA upstream 116477 8204341 ~ 8212838 (+) True LOC120557172
XM_039797255.1 mRNA upstream 128628 8191703 ~ 8200687 (+) True rae1
XM_039797253.1 mRNA upstream 129820 8191703 ~ 8199495 (+) False rae1
XM_039797936.1 mRNA downstream 115847 8450701 ~ 8453316 (+) True hmces
XM_039796423.1 mRNA downstream 131746 8466600 ~ 8474022 (+) True rpn1
XM_039796425.1 mRNA downstream 148336 8483190 ~ 8496659 (+) True gata2a
XM_039796424.1 mRNA downstream 152520 8487374 ~ 8496659 (+) False gata2a
XM_039796426.1 mRNA downstream 152521 8487375 ~ 8496659 (+) False gata2a
TU49260 other upstream 100595 8227762 ~ 8228720 (+) True G36744
TU48863 other upstream 1070365 7242209 ~ 7258950 (+) False G36458
TU48651 other upstream 1690928 6635302 ~ 6638387 (+) False setmar
TU48489 other upstream 2276546 6035100 ~ 6052769 (+) False rybpb
TU48469 other upstream 2404915 5920924 ~ 5924400 (+) True G36156
unassigned_transcript_183 other downstream 282144 8616998 ~ 8617069 (+) True trnae-cuc_4
unassigned_transcript_186 other downstream 307176 8642030 ~ 8642101 (+) True trnae-cuc_5
unassigned_transcript_189 other downstream 376155 8711009 ~ 8711080 (+) True trnae-cuc_6
unassigned_transcript_190 other downstream 404113 8738967 ~ 8739038 (+) True trnae-cuc_7
unassigned_transcript_191 other downstream 406852 8741706 ~ 8741777 (+) True trnae-cuc_8

Expression Profile