RNA id: XM_039796424.1


Basic Information

Item Value
RNA id XM_039796424.1
length 2618
RNA type mRNA
GC content 0.53
exon number 6
gene id gata2a
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 8483190 ~ 8496659 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCAGCCGCATCAGTCTGCGCCACATCTCATTACTGAGCTTGAGCACTGCATGGATCAGGAGGTTTACACATCCAAGCTGTATTTGCCATCATCAGCTGGTCGAAATTGCAACAGGTAACGGAGGAGAAAGGAGACCCGGTTATTAAAGGATTCTATTTCTAAAGTAAGCCTAAATAAACGCAGCCGAGACTTTCACAGCTCACGAACTACATTATAAGGAGGATTTAACTTCCACTTGGAAGCAAACATAAAGTAGcccaacacacagagacgccttcagaggaaaggacacGGCCAGCTCAGCCATGGAGGTCGCAGCGGCCGATCAGTCTCGGTGGATGGCGCACCATCACGCTGTGCTGAATGGCCAGCACCCGGACTCTCACCACCACAGTCTGAGCCACAACTACATGGAGCCGATGGCGCCTTTACTGCCCCAGGACGAAGTTGACATGTTTCTGAACCACTTGGACTCTCAAGGGAACCCCTACTACACCAACTCCCGGGCCAGGGTCACATACAGCCAAGCACACGCTCGACTCACTGGGAACCAGGTTTGCCGACCACACCTCATCCACAGCCCCGGTATTCCCTGGCTGGACCCCGGGAAAGCAGCCCTGTCCGCGGCCCACCACCATAACGCATGGGCGGTCAGCCACTTCAGCAAACCCGGCCTGCACCCCACCGGCTCCGGCTacccctgcagcagcagcaccggcACGGCACCGGTCTCGTCGCTCACTCCGGCGTCCCACTCCAGCCCGCACCTCTACAGTTTCCCCCCTACCCCTCCGAAAGACGTGTCCCCGGACCCCGGCCCTACCTCTCCGACCTCCAGCTCGACTAGAATGGACGAGAAGGAGTCGATCAAGTACCAAGTGCAGCTGACGGACGGCATGAAAATGGAGAGCTGTAGTCCGCTCCGCAGCGGCCTGGCCTCGATGAATGGCCAGGCCACGCACCACCCTATCCCGACCTACCCTGCCTACCCTCTGCATACACCCCACGACTACAGCGGCAGCCTCTTCCACCCCGGCAGCCTACTCGGCGGGTCCTCCTCCAGCTTTACGCCCAAATGCAAGAGCAAGGCCAGGTCGAGCTCAGAATTATATGCAGAGGGTCGTGAATGTGTAAACTGCGGTGCCACCTCCACCCCTCTGTGGCGAAGGGATGGTACCGGCCACTACCTGTGCAACGCCTGTGGACTGTACCACAAGATGAACGGCCAGAACCGACCACTTATCAAGCCCAAACGTAGACTGTCCGCCGCTAGACGTGCAGGCACCTGCTGTGCAAACTGTcagaccaccaccaccaccctgtGGAGGCGCAACGGGAACGGAGACCCGGTGTGTAACGCCTGCGGCCTTTACTTTAAACTGCACAATGTCAACAGACCCCTGACCATGAAGAAAGAAGGCATCCAGACACGCAACCGCAAGATGTCCAGCAAGTCCAAGAGGAACAAGCGAGCAGGGGACGGCTTCGACGAGCTATCCAAGTGCATGCAGGACAAGGCCTCTCCCTTCGGCGGTGCACACGGCCTCACCAGCCACATGACCCACATGGGTCACCTGCCCCCCTTCAGCCACTCGGGACACATGCTGCCTACTCCCACGCCCATTCACCCTTCATTCGGTCACCCCCACCACTCCAATCGCTCGCCGGTCTGGGCTGAGCCTCACTGAGGCCCCTCCAGACCCAAAACTCCTCCGCTTGTAAGAGCCACCACATCGCCATTAACACAAAAATGGCCTCCACATCAAGTCGAAAGCTGAGCAGACTTGGTGCATCATGTACAGTGGTTGGAGGGGAGAGACTTTCAGTTGGGTTTTATTGACTGAAGCTCGCGTCATGCCTGACCTCACTGATGGGACACTGCAGAGCAGGACTTTTGCGGACTCTGTAAAGAGCTAATATGACGAGGGGTTTCTTAGTCCCTTGGTGACTGAGGCTTGCAGGAATGGAGTGAATGGAGACGCTTGTCATTCTTTTTGCTTATTTTTACTAAGTCACTTTGGTACCCACCTCTCCATGACCCTGTAACAGGAGACTCGCTAGAGGTCTTAAAAAGAACTGCTGTTTTAACCTCACGGCCATCTCATTGTATACTGAGATACGTGCACCCTGTCCATCCCCAGGCTGTCGTCCATAACTGCTGTGGACAGACAAACTCTTCAGTGCTGGAGGTCTCAAGACTGTCTGACACCTACAGCACCCGTACACCCCCGTTACAAACCAGTCAGACGCAGACTACAGTACCCACAAACCAGTGCTCTCCTCACATGCTGGATTGTACACCCCCACAGCGCTCACCACCTGTTTTTAATAATGGACTTTTATGGAAAAAATACATAGTAAATAGAGTGTTTATAAATGCTTAAttgctattattgttgttatattTGATGTTATAATTATTGCTACGATAATTTATTTTCCCTCTTTAAGCTTTCGTCAAAGACACATGGAAACTTAGGATTTTGATTTCATGGTTATTACGTAAAGAAAAACAGACCTATCTTAGATGAAAAGTCCCTGAGCTGTacgtttttatcattttttccaTCTCACAAAagtaaaggaaataaaggaaaataAACTGCCTCGTAAGTTTA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0048821 erythrocyte development biological_process
GO:0003190 atrioventricular valve formation biological_process
GO:0060215 primitive hemopoiesis biological_process
GO:0035912 dorsal aorta morphogenesis biological_process
GO:0021514 ventral spinal cord interneuron differentiation biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49374 lncRNA upstream 41783 8445392 ~ 8445591 (+) True G36836
TU49365 lncRNA upstream 61843 8422173 ~ 8425531 (+) True G36827
TU49358 lncRNA upstream 67793 8418304 ~ 8419581 (+) True G36826
TU49352 lncRNA upstream 79681 8405244 ~ 8407693 (+) True G36820
TU49271 lncRNA upstream 242928 8239463 ~ 8244446 (+) False G36754
TU49447 lncRNA downstream 113702 8610361 ~ 8611088 (+) True G36887
TU49452 lncRNA downstream 115637 8612296 ~ 8612987 (+) True G36890
TU49464 lncRNA downstream 128062 8624721 ~ 8660277 (+) True G36900
XR_005639054.1 lncRNA downstream 389114 8885773 ~ 8940038 (+) True LOC120558080
TU49576 lncRNA downstream 542804 9039463 ~ 9039769 (+) True G36988
XM_039796423.1 mRNA upstream 13352 8466600 ~ 8474022 (+) True rpn1
XM_039797936.1 mRNA upstream 34058 8450701 ~ 8453316 (+) True hmces
XM_039798872.1 mRNA upstream 152520 8329315 ~ 8334854 (+) True si:dkey-202e22.2
XM_039799038.1 mRNA downstream 295081 8791740 ~ 8798039 (+) False uba3
XM_039799039.1 mRNA downstream 295114 8791773 ~ 8798039 (+) True uba3
XM_039799036.1 mRNA downstream 295128 8791787 ~ 8798039 (+) False uba3
XM_039799035.1 mRNA downstream 295221 8791880 ~ 8798039 (+) False uba3
XM_039799037.1 mRNA downstream 295429 8792088 ~ 8798039 (+) False uba3
TU49260 other upstream 258654 8227762 ~ 8228720 (+) True G36744
TU48863 other upstream 1228424 7242209 ~ 7258950 (+) False G36458
TU48651 other upstream 1848987 6635302 ~ 6638387 (+) False setmar
TU48489 other upstream 2434605 6035100 ~ 6052769 (+) False rybpb
TU48469 other upstream 2562974 5920924 ~ 5924400 (+) True G36156
unassigned_transcript_183 other downstream 120339 8616998 ~ 8617069 (+) True trnae-cuc_4
unassigned_transcript_186 other downstream 145371 8642030 ~ 8642101 (+) True trnae-cuc_5
unassigned_transcript_189 other downstream 214350 8711009 ~ 8711080 (+) True trnae-cuc_6
unassigned_transcript_190 other downstream 242308 8738967 ~ 8739038 (+) True trnae-cuc_7
unassigned_transcript_191 other downstream 245047 8741706 ~ 8741777 (+) True trnae-cuc_8

Expression Profile