RNA id: TU49365


Basic Information

Item Value
RNA id TU49365
length 1439
lncRNA type inter_gene
GC content 0.46
exon number 4
gene id G36827
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 8422173 ~ 8425531 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGTGTCACAAgcacttttattaaaacagacggtcatcaaaataaaatatatattgtttaatttaaaataccctatgttaaataaaaaggccCTATCTCTAAGAAAGCTCCTTCagttgttttcaacaacaacaataatagacTGATTAAGAGAGAGATAAGAAAAGGAgcgtgcgatggactgaagtgTAGGATACAAAAACTTTCTTTGACCATATGGCCGATTGTTACTGTACAGTTACctggtttatcagtgaagtgcctgaactacactgcagactggattctctactcacagagtgacagCTGACTCATTAGGGTTAGGGGAACGAACAGGTCCGGTGTGGGTTAAATGTGCGGTCACAGGCGTTATATACATCTTGTGTATGTTAATGGTAAGTCACGTGATCGGGATATGATGGGAGTATTTTCGTGGGCTCGGGATGGGAGCGACAATTGATTCCTGTGTCACCCCCTACTAATAacatactgtaactgtagacaaatgACAGCAGTGTGCACTGGCGCTGCTGCAGGAGAGCCGAGGGGGAGTgggtgggggcggggctgcgcgaAGAGTGAGAGAAGAGATGCAAagacaggcacggctttacagaagaaatgggtcatgtaacgcaacattataCCGATATAAACGGTATTGTCTAATCCCATATCTCGTTtgaaaatatatcgatataaggtaaaatatcgatatatcgcccagccctagtgtgtgtgagagtgtgtgtgtgtgtgtgtgtgtgtgtgttattatgcaAATATGAAGTTGCTCTTGCCTGGCATTGCTGGAGGGTCCCAGCACACTTTGTCCTAGAGCAGTGCCCTGGAAGGCTGTGGCATGCAGCAGGTCAAGGCAAACTTCCTGCAGGTTACCCTCGACTTCCTCTAGCTCACGCAGCACCACACCCCTCTGCTGCTCGATCTCAGCCTCGTTCAGCGAGCAGCTCTGCACCACCTCTGACAGCAGCTCCACGGCTTTGGGCAGGTCTTTTGCAAGGGTCTTCATGTAGTATGCAGTGTGCTCTCGGGAGGTGTAGGCACTCAAGTGAGCACCCATTGACTCCACCTGCTGCTCCAGGGCTGTCTGAGGGTGCTTCTTGGTTCCCTTGAAAGCCATGTGCTCCAGGAAGAAGCCTGCTCCGTTGTTTTTCTCACTCTCATAGCGACTGCCAGCACTGATCCACAGTCCAACAGTGCATGTGGCATGTCCAGTCTCCTCAGATGCGACCTTCAAACCATTATCCAGGGTAGTGAGGCGAGTTTCAGGGGCTCCCACCAGGCTCTGGGCATAGCTGACTGAGGCCCGTCCACGCCTCAGAGACAGCAGGATGGGCtgaaggggagaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49358 lncRNA upstream 2592 8418304 ~ 8419581 (+) True G36826
TU49352 lncRNA upstream 14480 8405244 ~ 8407693 (+) True G36820
TU49271 lncRNA upstream 177727 8239463 ~ 8244446 (+) False G36754
TU49270 lncRNA upstream 180281 8239463 ~ 8241892 (+) True G36754
TU49261 lncRNA upstream 197401 8224258 ~ 8224772 (+) True G36745
TU49374 lncRNA downstream 19861 8445392 ~ 8445591 (+) True G36836
TU49447 lncRNA downstream 184830 8610361 ~ 8611088 (+) True G36887
TU49452 lncRNA downstream 186765 8612296 ~ 8612987 (+) True G36890
TU49464 lncRNA downstream 199190 8624721 ~ 8660277 (+) True G36900
XR_005639054.1 lncRNA downstream 460242 8885773 ~ 8940038 (+) True LOC120558080
XM_039798872.1 mRNA upstream 87319 8329315 ~ 8334854 (+) True si:dkey-202e22.2
XM_039798873.1 mRNA upstream 87319 8329315 ~ 8334854 (+) False si:dkey-202e22.2
XM_039798875.1 mRNA upstream 88168 8329315 ~ 8334005 (+) False si:dkey-202e22.2
XM_039798532.1 mRNA upstream 185524 8233082 ~ 8236649 (+) True arpc4l
XM_039797256.1 mRNA upstream 209335 8202280 ~ 8212838 (+) False LOC120557172
XM_039797936.1 mRNA downstream 25170 8450701 ~ 8453316 (+) True hmces
XM_039796423.1 mRNA downstream 41069 8466600 ~ 8474022 (+) True rpn1
XM_039796425.1 mRNA downstream 57659 8483190 ~ 8496659 (+) True gata2a
XM_039796424.1 mRNA downstream 61843 8487374 ~ 8496659 (+) False gata2a
XM_039796426.1 mRNA downstream 61844 8487375 ~ 8496659 (+) False gata2a
TU49260 other upstream 193453 8227762 ~ 8228720 (+) True G36744
TU48863 other upstream 1163223 7242209 ~ 7258950 (+) False G36458
TU48651 other upstream 1783786 6635302 ~ 6638387 (+) False setmar
TU48489 other upstream 2369404 6035100 ~ 6052769 (+) False rybpb
TU48469 other upstream 2497773 5920924 ~ 5924400 (+) True G36156
unassigned_transcript_183 other downstream 191467 8616998 ~ 8617069 (+) True trnae-cuc_4
unassigned_transcript_186 other downstream 216499 8642030 ~ 8642101 (+) True trnae-cuc_5
unassigned_transcript_189 other downstream 285478 8711009 ~ 8711080 (+) True trnae-cuc_6
unassigned_transcript_190 other downstream 313436 8738967 ~ 8739038 (+) True trnae-cuc_7
unassigned_transcript_191 other downstream 316175 8741706 ~ 8741777 (+) True trnae-cuc_8

Expression Profile