rpn1 (rpn1,LOC107091506)


Basic Information

Item Value
gene id rpn1
gene name rpn1,LOC107091506
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 8466600 ~ 8474022 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039796423.1
GTGACGCCATCACGTCGGACCGAAGGAAGCGTCATCCTTTCTGATGTAGAGCGGCCTTTCTTTGCTGCTCTACCGTTCCCTCATTCTGTCCGCTCTTatcccagtatttccgctctgaaATTCTCTAACCATGACTCGAAAGTCGCAAATTCTCGCCGCTTGCATGCTGCTCCTAACTGCTGTGAGCTCTGAGGTTTCAGCGGACGGTTTGGTGAACGAGGACGTGAAGAGGACAGTGGACCTGGGCACTCATTTGGCCAAGATTACCGCGGAGATCGTGCTGTCCAACCAGGGACCCTCTGCCGTCCACAGCTTCGTATTAGCGGTAGAGGCTGACCTGGCCCCGCACCTGGCGTACATCGGAGCTTCGGTGAAgggtgatgaggaggaggatggcACACTTGAACTCCAACAGACAACAATTCAGAGCCAAAGTGGGGTTTTTTACAAAGTGCAGCTGCCCTCCAATCTGGCGCCAGGTGCTCAGCTGAAAACGAAGGTGGAGATGACCTTTAGCCATGTCCTGCAGCCCTTccccacacacatcacacaggcTGAGCGCCAGTTGGTGGTCTTTCAGGGGAACCACTACCTGTACTCCCCGTACCCCACCCGCAGTCAGACCACGCGTGTCCGCCTAGCCTCCAAGACTGTGGAGACCTACACCAAGCTGGGTAACCCCAGCAAGAACGATGAGATCATTGAATATGGACCTTTCCGTGATGTGGCTCCATTCAGCGAGGATACAATGAAGATCCATTACGAAAACAACTCGCCCTTCCTCACCATCAGCAGCATCACTCGGACCATTGAGGTCTCTCACTGGGGTAACATTGCCGTGGAAGAGACCATTGACCTGAGGCACACAGGAGCCGCCCTGAAGGGGCCTTTTTCACGTTACGATTATCAGCGGCAGTCAGACAGCGGCATCTCATCTGTCAAATCCTTCAAGACTATCCTTCCTGCCTCGGCCCAGGACGTATACTACAGAGATGAGATTGGCAACATCTCCACCTCCCATCTGCAGGTTTTGGAAGACTCGGTGGAAGTGGAGGTCAGGCCTCGGTTCCCCTTGTTCGGAGGCTGGAAGACCCACTACATGATTGGCTACAATTTGCCCAGCTACGAGTACCTCTACACCCTAGgTGACCAGTATGCACTGAAGATGAGACTAGTTGACCATGTGTATGATGACCAGGTGATTGACGCCCTCACTGTGAAAATCATCCTGCCAGAGGGGGCCAGAAACATCCACGTGGATACACCTTACAAAATTGATCGGGAGCCAAACCAGCTACACTATACGTATCTGGATACCTTTGGCCGACCGGTGCTGGTCGCCACTAAGAACAACCTGGTGGAGCATCACATTCAGGATGTTGTGGTTCATTATAACTTCAACAGGATCCTGATGCTGCAGGAGCCTCTCTTGGTTGTAGGGGCCTTCTACATCCTCTTCTTCACTGTCATCATTTATGTCCGCCTGGACTTTGCCATCACAAAGGACCCTGCGGCTGAGGTGCGTATGAAGGTGGCCTCCATCACCGAGCAGGTGCTGACTCTGGTCAACAAACGTCTGGGTCTGTACCGGCACATGGACGAGGTGGTCAATCGCTACAAGCAGTCCCGCGACACCGGGGCGCTCAACAGCGGCCGGAAGACTCTGGAGGCCGACCACCGCACTCTCACCAACGAAATCAGCACGCTGCAGGCCCGCCTCAAAGCTGAGGGCTCCGACTTGGCTGAAAAgGTCGGGGAGGTGCAGAAGCTGGACGGCCAGGTGAAGGAGCTGGTGTGTCGCTCCGGCCAGGAGGCCGAGCGGCTGGTGGCGGGCAAGGTCAAGAAGGAGGCTTACATCGAGAGCGAGAAGACTCTGACCGGCAAGAGACAAGAGCTCGTCAGCCGCATTGACAGTCTGCTGGATGCCCTCTAAACTACTCCTgccacactcgcacacacaaacgtacacacacaaacgtacacacacacacacaccgccccTGCTACAACATACTGTAAAACCGACTGTTTGTATGAATGAGAATGCTATGTGACACAAACGCTTACGTTTTTTTCACCATCGGACATGGACAATTAACATCTGATCTTCTAGTAGCGATTGGTGCCTTGTGATAAACCTAAGGTCACTGCGCGCTCAGCTCTACAGCAGCTACGTCACAACTTTTGGCTTTATCGTTTGTCTGTTTTTGAGTTTGTTGAGGTACACTTCCAACTTTGTCCCACTGCTCAAACTTGACACTTCCATTTTCATGTTCTGGACTTGGTATTATTTTACCCCCTCTCTTAAATATGTTGGTTATGGGACGTTTTTTGGAAACTAATAGAAGGGCCCAAGTGTTTCCGTTCTCATGTCTTTACTCACATATGCCATATTCTAAGATGAAATCATCTTTAGCTCTTAAGTAAGAAGGTGATCTTTTTACAATCGTCTCTTTTGCATTTACAACTTCTTTTCTACTCGCCCCTGACTGATGtttatattttaagaaaaaaatttgAAGCTTGAATTCTGTGTCATCCCAAACACTTGTTTTTGATGTTCCTCAGTCatattttctacattttgtatgatttttgttttgtaaatggtgttttttgaccATGAGATTAGTGAATACATGAGATTAGGTTTGTATGTGAGAAAAGACATGGGAGATGGGACACAAATGTTTGTGAAACGGGCAATGCTATGGAAAGCTGTCAAATTTGAAATAAAGTTTTGAGAAACTTA

Function

symbol description
rpn1 Predicted to be involved in protein N-linked glycosylation via asparagine. Predicted to act upstream of or within protein glycosylation. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be part of oligosaccharyltransferase complex. Orthologous to human RPN1 (ribophorin I).

NR:

description
PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity molecular_function

KEGG:

id description
K12666 OST1, RPN1; oligosaccharyltransferase complex subunit alpha (ribophorin I)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039796423.1 True 2752 mRNA 0.50 10 8466600 8474022

Neighbor

gene id symbol gene type direction distance location
hmces hmces coding upstream 13284 8450701 ~ 8453316 (+)
si:dkey-202e22.2 LOC104952071,LOC103375511 coding upstream 131746 8329315 ~ 8334854 (+)
arpc4l arpc4,LOC103358720 coding upstream 229951 8233082 ~ 8236649 (+)
LOC120557172 rbm38,LOC104939027,LOC101475440,LOC103365886,LOC107102025,LOC107384941 coding upstream 253762 8202280 ~ 8212838 (+)
rae1 rae1 coding upstream 265913 8191703 ~ 8200687 (+)
gata2a LOC103359878,LOC102204047,LOC100705840,LOC101487525,LOC102779036 coding downstream 9168 8483190 ~ 8496659 (+)
trnae-cuc_4 NA coding downstream 142976 8616998 ~ 8617069 (+)
trnae-cuc_5 NA coding downstream 168008 8642030 ~ 8642101 (+)
trnae-cuc_6 NA coding downstream 236987 8711009 ~ 8711080 (+)
trnae-cuc_7 NA coding downstream 264945 8738967 ~ 8739038 (+)
G36836 NA non-coding upstream 21009 8445392 ~ 8445591 (+)
G36827 LOC100705312,LOC102203484,LOC101465335,LOC104933013 non-coding upstream 41069 8422173 ~ 8425531 (+)
G36826 LOC100705312 non-coding upstream 47019 8418304 ~ 8419581 (+)
G36820 NA non-coding upstream 58907 8405244 ~ 8407693 (+)
G36754 NA non-coding upstream 222154 8239463 ~ 8244446 (+)
G36887 LOC101487045 non-coding downstream 136339 8610361 ~ 8611088 (+)
G36890 NA non-coding downstream 138274 8612296 ~ 8612987 (+)
G36900 NA non-coding downstream 150699 8624721 ~ 8660277 (+)
LOC120558080 NA non-coding downstream 411751 8885773 ~ 8940038 (+)
G36988 NA non-coding downstream 565441 9039463 ~ 9039769 (+)
G36744 NA other upstream 237880 8227762 ~ 8228720 (+)
hcfc1a hcfc1,LOC102799381,LOC102206223 other upstream 1160257 7288907 ~ 7306343 (+)
G36458 LOC100304472,LOC107385856 other upstream 1194232 7209996 ~ 7272368 (+)
si:dkey-245f22.3 NA other upstream 1279386 7183199 ~ 7187214 (+)
setmar LOC100698471 other upstream 1828077 6635280 ~ 6638523 (+)
prickle2b prickle2 other downstream 1286211 9760233 ~ 9856656 (+)
G37197 NA other downstream 1831165 10305187 ~ 10309996 (+)
glrx glrx other downstream 1913886 10387908 ~ 10396187 (+)
G37397 LOC102299939,LOC103353648,LOC103366902,LOC102208776,LOC100700987,LOC104921056 other downstream 2523208 10997230 ~ 11012909 (+)
G37525 evc2 other downstream 2878056 11352078 ~ 11352387 (+)

Expression


Co-expression Network