RNA id: TU49447


Basic Information

Item Value
RNA id TU49447
length 538
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id G36887
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 8610361 ~ 8611088 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGGTATTATTTACATTTAACTTCACAAAAATCTAAGAATTAGCTCAAAAATATATTCCACCTGAAGTTGAACAGCTGCATCTGAACCCTCAAAGATTCTGCGGGCCACtcccttgttttgtttgctcatCCCATCCAGGAAGGAATAATCCACATCATTTCCAAATCCAAGACAGAACAGAGACATGTTTCCTCCAATAGCAGAATGAATGTTCTCCTGAATCTTAGGGAGGTGACTCTCTCCACTATTTGGCATTCCATCAGTCAGTAAAATAATCATATCGACGCTCCTCTCTGGGAGCTTCTTCTCTTGCCTGTCTTTGACCAGCATGTTGACACCTTCCAACACTGCATCATTGATATTGGTTActCCCCGTGTTTAATCATTCTGACATAGTCCATTCCTGCAGCCACATTTTCCTTGGTTGCTTTGGCAAGTGATGTTCTCCAAGATTGAATTCTGCTATCAAACTGGATAAGGGCAAAGTAGTCTTCCTCACTGAGGTCTTTTAGGATGGCCAGCAATGCCTCTCGTGTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49374 lncRNA upstream 164770 8445392 ~ 8445591 (+) True G36836
TU49365 lncRNA upstream 184830 8422173 ~ 8425531 (+) True G36827
TU49358 lncRNA upstream 190780 8418304 ~ 8419581 (+) True G36826
TU49352 lncRNA upstream 202668 8405244 ~ 8407693 (+) True G36820
TU49271 lncRNA upstream 365915 8239463 ~ 8244446 (+) False G36754
TU49452 lncRNA downstream 1208 8612296 ~ 8612987 (+) True G36890
TU49464 lncRNA downstream 13633 8624721 ~ 8660277 (+) True G36900
XR_005639054.1 lncRNA downstream 274685 8885773 ~ 8940038 (+) True LOC120558080
TU49576 lncRNA downstream 428375 9039463 ~ 9039769 (+) True G36988
TU49580 lncRNA downstream 618992 9230080 ~ 9230363 (+) True G36991
XM_039796425.1 mRNA upstream 113702 8483190 ~ 8496659 (+) True gata2a
XM_039796424.1 mRNA upstream 113702 8487374 ~ 8496659 (+) False gata2a
XM_039796426.1 mRNA upstream 113702 8487375 ~ 8496659 (+) False gata2a
XM_039796428.1 mRNA upstream 113702 8488566 ~ 8496659 (+) False gata2a
XM_039796427.1 mRNA upstream 114632 8487922 ~ 8495729 (+) False gata2a
XM_039799038.1 mRNA downstream 180652 8791740 ~ 8798039 (+) False uba3
XM_039799039.1 mRNA downstream 180685 8791773 ~ 8798039 (+) True uba3
XM_039799036.1 mRNA downstream 180699 8791787 ~ 8798039 (+) False uba3
XM_039799035.1 mRNA downstream 180792 8791880 ~ 8798039 (+) False uba3
XM_039799037.1 mRNA downstream 181000 8792088 ~ 8798039 (+) False uba3
TU49260 other upstream 381641 8227762 ~ 8228720 (+) True G36744
TU48863 other upstream 1351411 7242209 ~ 7258950 (+) False G36458
TU48651 other upstream 1971974 6635302 ~ 6638387 (+) False setmar
TU48489 other upstream 2557592 6035100 ~ 6052769 (+) False rybpb
TU48469 other upstream 2685961 5920924 ~ 5924400 (+) True G36156
unassigned_transcript_183 other downstream 5910 8616998 ~ 8617069 (+) True trnae-cuc_4
unassigned_transcript_186 other downstream 30942 8642030 ~ 8642101 (+) True trnae-cuc_5
unassigned_transcript_189 other downstream 99921 8711009 ~ 8711080 (+) True trnae-cuc_6
unassigned_transcript_190 other downstream 127879 8738967 ~ 8739038 (+) True trnae-cuc_7
unassigned_transcript_191 other downstream 130618 8741706 ~ 8741777 (+) True trnae-cuc_8

Expression Profile