RNA id: XM_039799039.1


Basic Information

Item Value
RNA id XM_039799039.1
length 1990
RNA type mRNA
GC content 0.44
exon number 18
gene id uba3
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 8791740 ~ 8798039 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTGTATTTACCACTGTTAACGTCGGCATTTGAAGGCAATATAGCTAGCTAAGTAGCCAAACATGGCCGACACGGATGAGCCggagaagaaaagaaggagagtAGTGGAGCTGGCTGAGAAGTTAGTGATGAATTGGTAGAACTGGCGGAAGGTTTGAGGTTACCAGACAGGAGgatGGTGGTTGATGGAGGCAGTGGACGCACCTGTGAGTGGGAGGGGCGGTGGAACCATATCAAAAAGTTTTTGGAAAGGTCTGGGCCCTTCACGCATCCTGACTTTGAACCTAGCACAGAGTCTTTGCAGTTTATGTTAGAAACCTGCAAAATCCTGGTCATTGGTGCTGGTGGTCTGGGATGTGAGCTGCTGAAAGACCTGGCTTTATCAGGCTTTCATAACATTCATGTTGTTGACATGGACACCATTGATTTGTCAAACCTGAATCGACAGTTCCTCTTCAGGCCAAAAGATGTCGGTCGGCCCAAGGCGGACGTTGCAGCTGACTTCATCAACAGCCGCATACCTGGGTGCTGTGTAGTCCCACATTTTAAGAAAATTCAAGACTTAGATGAAACATTCTACAGACAATTCCATATCATTGTCTGTGGACTGGACTCTATAGTTGCCAGGAGGTGGATGAATGGTATGCTGCTGTCTTTACTGGTGTATGAGGATGGTGTCTTAGACCCAGGTTCCATCATTCCTCTAATTGATGGTGGGACTGAAGGCTTTAAAGGCAATGCCAGAGTCATTCTCCCTGGCATGACCGCCTGCATCGACTGTACCCTTGAGCTTTACCCTCCTCAGATCAACTTCCCCATGTGTACAATAGCCTCCATGCCTCGATTGCCAGAACATTGCATTGAGTATGTCCGGGTGCTGCTGTGGCCCAAAGAGACACCCTTTGGAGATGGTGTGATCCTGGATGGGGATGACCCAGAGCACATCCAGTGGGTGTACCAGAGATCCCTGGAGAGGGCAGCAGATTTCCACATAACAGGAGTCACATACAGACTAACCCAGGGTGTTGTAAAGAGGATAATTCCAGCTGTAGCGTCTACAAATGCTGTCATAGCTGCTGCTTGTGCAACTGAGGTTTTCAAAATAGCATCAAGTGCCTATATACCTCTTAATAACTACATGGTCTTCAATGATGTCGACGGGCTGTACACCTACACTTTTGAAGCAGAACGAAAGGAAAACTGTTCAGCCTGCAGCCAGGTACCTCTGGACTTGCACTTTTCTCCATCTTCCAAACTCCAGGAGATGTTGGACTACCTGACTGAGAGTGCCTCCCTACAAATGAAATCCCCTGCTATAACCGCAACAGTGGAAGGAAAGAACAAAACATTATATTTACAGtcTGTCGCTTCAATTGAACAGAGGACACGGCCAAATCTGTCCAAAACCCTGAAGGAGCTGGGGCTGACTGACGGACAAGAGCTTGCTGTAGCTGATGTCACCACACCCCAGACCATGTTGTTCAGACTCTGCTTTACCTCATAGGATAAACTCAAGCACTCCCACACAACCAGTTGATGTCATTCTTGTTTATTGGCCAACtataacttgatgcagaatatTTAAAATGGCCTAAAAACTAGAACAGTTTAAAGTGTATTCATTCTCAGTGTAAATGAACAGTGTAATTTCATCGTTTTAATTTACTTATTGACTAAAGTTAATGTTTTGCACTGAAAAGCCAAAATCATAGTTCATACCTTCTCATCTTTTGGTGAAACATTGCTTGCAAATGTCGAGGATTTTGGCATTCAATGTGTTATTTGCACTACAACCTGAAGCGTGCTATGTGCAAACAAAGAGACATAAATTTGTTACTTTGGTAAATGTATTCTGTACATGTTCtagttttaaatattttgaatatttatttattccaaCAGTTTTTTTAGTTGCAGAAACCACTGAAGTGGTAATCGACAGACACTGATAATGATGTGTGACCtggaataaaaatgtttttcttacaaa

Function

GO: NA

KEGG:

id description
K10686 UBA3, UBE1C; NEDD8-activating enzyme E1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49464 lncRNA upstream 131496 8624721 ~ 8660277 (+) True G36900
TU49452 lncRNA upstream 178786 8612296 ~ 8612987 (+) True G36890
TU49447 lncRNA upstream 180685 8610361 ~ 8611088 (+) True G36887
TU49374 lncRNA upstream 346182 8445392 ~ 8445591 (+) True G36836
TU49365 lncRNA upstream 366242 8422173 ~ 8425531 (+) True G36827
XR_005639054.1 lncRNA downstream 87734 8885773 ~ 8940038 (+) True LOC120558080
TU49576 lncRNA downstream 241424 9039463 ~ 9039769 (+) True G36988
TU49580 lncRNA downstream 432041 9230080 ~ 9230363 (+) True G36991
TU49578 lncRNA downstream 432425 9230464 ~ 9230954 (+) True G36990
TU49579 lncRNA downstream 432425 9230464 ~ 9230923 (+) False G36990
XM_039796425.1 mRNA upstream 295114 8483190 ~ 8496659 (+) True gata2a
XM_039798534.1 mRNA downstream 334 8798373 ~ 8810394 (+) True tmf1
XM_039798967.1 mRNA downstream 12782 8810821 ~ 8827379 (+) True eogt
XM_039798968.1 mRNA downstream 12782 8810821 ~ 8826546 (+) False eogt
XM_039798377.1 mRNA downstream 34225 8832264 ~ 8872166 (+) True tafa4b
XM_039797739.1 mRNA downstream 306297 9104336 ~ 9229981 (+) True suclg2
unassigned_transcript_191 other upstream 49996 8741706 ~ 8741777 (+) True trnae-cuc_8
unassigned_transcript_190 other upstream 52735 8738967 ~ 8739038 (+) True trnae-cuc_7
unassigned_transcript_189 other upstream 80693 8711009 ~ 8711080 (+) True trnae-cuc_6
unassigned_transcript_186 other upstream 149672 8642030 ~ 8642101 (+) True trnae-cuc_5
unassigned_transcript_183 other upstream 174704 8616998 ~ 8617069 (+) True trnae-cuc_4
unassigned_transcript_192 other downstream 9577 8807616 ~ 8807688 (+) True trnar-acg_13
unassigned_transcript_195 other downstream 18286 8816325 ~ 8816397 (+) True trnar-acg_14
unassigned_transcript_197 other downstream 24198 8822237 ~ 8822308 (+) True trnae-cuc_12
unassigned_transcript_198 other downstream 24621 8822660 ~ 8822731 (+) True trnae-cuc_13
TU49895 other downstream 1507148 10305187 ~ 10309996 (+) True G37197

Expression Profile