RNA id: TU49578


Basic Information

Item Value
RNA id TU49578
length 491
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G36990
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 9230464 ~ 9230954 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ccagagagagttgtgtggagctgatagtctaaattagctttgtatcaactcatttgtcAATGGCTTAAATGTCACAGACATtcattaatgtaaaaaagttacacactaaagctttaaaggtaCAGTATGACTGAAAACTGCTCATTCTTTTGAAACCATTTTCATGGCACTTAACACAAATTCTGTCTGTTTTCTAAGTGACAAATTCATCAATCCATCCGCTGCCTCATCTGTGAATCTACCCACGCTGTGAATTTTATGCATCATGTCTTAATTGTTAAGTGTTCAATGGCTAAGAGTGTGCTTAGATCTGTGCCTATTTCATGACGGCTTAAGAGTTTTGTAAACTATCTTTCAGTACCAGCAGTAGTTTCATACAGAGtgagaaaacaaaatcaaaaatgcAATTGTACTTACTGtagcttttttttataatcatgAATGTATATTAACAGGATATCCTGAATACAGTGTATAAACTGTGTTTATAA

Function

GO:

id name namespace
GO:0009072 aromatic amino acid family metabolic process biological_process

KEGG:

id description
ko00340 Histidine metabolism
ko04610 Complement and coagulation cascades

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49580 lncRNA upstream 101 9230080 ~ 9230363 (+) True G36991
TU49576 lncRNA upstream 190695 9039463 ~ 9039769 (+) True G36988
XR_005639054.1 lncRNA upstream 290426 8885773 ~ 8940038 (+) True LOC120558080
TU49464 lncRNA upstream 570187 8624721 ~ 8660277 (+) True G36900
TU49452 lncRNA upstream 617477 8612296 ~ 8612987 (+) True G36890
TU49623 lncRNA downstream 128550 9359504 ~ 9410661 (+) False G37023
TU49621 lncRNA downstream 169380 9400334 ~ 9410661 (+) True G37023
TU49718 lncRNA downstream 500903 9731857 ~ 9733351 (+) True G37064
TU49739 lncRNA downstream 530093 9761047 ~ 9772228 (+) False prickle2b
TU49772 lncRNA downstream 697081 9928035 ~ 10006856 (+) True G37104
XM_039797739.1 mRNA upstream 483 9104336 ~ 9229981 (+) True suclg2
XM_039797740.1 mRNA upstream 483 9104808 ~ 9229981 (+) False suclg2
XM_039798377.1 mRNA upstream 358298 8832264 ~ 8872166 (+) True tafa4b
XM_039798967.1 mRNA upstream 403085 8810821 ~ 8827379 (+) True eogt
XM_039798187.1 mRNA downstream 129237 9360191 ~ 9398603 (+) True lrig1
XM_039797029.1 mRNA downstream 264330 9495284 ~ 9650337 (+) True magi1b
XM_039797033.1 mRNA downstream 264330 9495284 ~ 9650337 (+) False magi1b
XM_039797030.1 mRNA downstream 264330 9495284 ~ 9650337 (+) False magi1b
XM_039797034.1 mRNA downstream 264330 9495284 ~ 9650337 (+) False magi1b
unassigned_transcript_198 other upstream 407733 8822660 ~ 8822731 (+) True trnae-cuc_13
unassigned_transcript_197 other upstream 408156 8822237 ~ 8822308 (+) True trnae-cuc_12
unassigned_transcript_195 other upstream 414067 8816325 ~ 8816397 (+) True trnar-acg_14
unassigned_transcript_192 other upstream 422776 8807616 ~ 8807688 (+) True trnar-acg_13
unassigned_transcript_191 other upstream 488687 8741706 ~ 8741777 (+) True trnae-cuc_8
TU49895 other downstream 1074233 10305187 ~ 10309996 (+) True G37197
TU50184 other downstream 1766276 10997230 ~ 10998137 (+) False G37397
TU50347 other downstream 2121124 11352078 ~ 11352387 (+) True G37525
TU50377 other downstream 2159785 11390739 ~ 11394334 (+) False LOC120557336
TU50430 other downstream 2549224 11780178 ~ 11805394 (+) True G37597

Expression Profile