RNA id: TU49772


Basic Information

Item Value
RNA id TU49772
length 369
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G37104
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 9928035 ~ 10006856 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTGTAGTATGATTTAAGGTGCAACATCAGCTCCTGGAGCGTTGCATGATTATCCATGCTGTACACAATACTCCTTTCTTTATGTAGTAGGCCTAATGACCTGCCACTCCGTCTgccttcctcctcatcctcttcctcctcttttttccTGTCACTCAAACTGCTGCTGTATGTCCTGTCCTGAGAGTAAACAATCAGCTCCATCTTGAACTGGGTTCTCAGCATGGCTTCAGCAGTGGACTCTTTTTGTTGCTTGATGGCTTCGATCTTTGTCTAGAAAATAAGATTCTGGTCAGTGTGAACACTGCGAAAAACATTATGCACTTTAAAATtttgatccatccatccatccatCCAGCCATCTTCTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49739 lncRNA upstream 155807 9761047 ~ 9772228 (+) False prickle2b
TU49718 lncRNA upstream 194684 9731857 ~ 9733351 (+) True G37064
TU49623 lncRNA upstream 517374 9359504 ~ 9410661 (+) False G37023
TU49621 lncRNA upstream 517374 9400334 ~ 9410661 (+) True G37023
TU49578 lncRNA upstream 697081 9230464 ~ 9230954 (+) True G36990
TU49854 lncRNA downstream 45272 10052128 ~ 10052337 (+) True G37163
TU49868 lncRNA downstream 197933 10204789 ~ 10206757 (+) True G37177
TU49881 lncRNA downstream 250394 10257250 ~ 10260329 (+) True G37186
TU49882 lncRNA downstream 250394 10257250 ~ 10260329 (+) False G37186
TU49897 lncRNA downstream 303211 10310067 ~ 10311163 (+) True G37198
XM_039798609.1 mRNA upstream 1553 9921081 ~ 9926482 (+) True thoc7
XM_039797833.1 mRNA upstream 41910 9880028 ~ 9886125 (+) True psmd6
XM_039797359.1 mRNA upstream 71379 9760233 ~ 9856656 (+) False prickle2b
XM_039797360.1 mRNA upstream 71379 9835060 ~ 9856656 (+) True prickle2b
XM_039797358.1 mRNA upstream 173537 9703011 ~ 9754498 (+) True adamts9
XM_039796495.1 mRNA downstream 6990 10013846 ~ 10016764 (+) True lyar
XM_039796497.1 mRNA downstream 10051 10016907 ~ 10029487 (+) False tmem128
XM_039796498.1 mRNA downstream 11818 10018674 ~ 10029487 (+) False tmem128
XM_039796496.1 mRNA downstream 11821 10018677 ~ 10029487 (+) True tmem128
XM_039796493.1 mRNA downstream 22730 10029586 ~ 10038874 (+) True otop1
unassigned_transcript_198 other upstream 1105304 8822660 ~ 8822731 (+) True trnae-cuc_13
unassigned_transcript_197 other upstream 1105727 8822237 ~ 8822308 (+) True trnae-cuc_12
unassigned_transcript_195 other upstream 1111638 8816325 ~ 8816397 (+) True trnar-acg_14
unassigned_transcript_192 other upstream 1120347 8807616 ~ 8807688 (+) True trnar-acg_13
unassigned_transcript_191 other upstream 1186258 8741706 ~ 8741777 (+) True trnae-cuc_8
TU49895 other downstream 298331 10305187 ~ 10309996 (+) True G37197
TU50184 other downstream 990374 10997230 ~ 10998137 (+) False G37397
TU50347 other downstream 1345222 11352078 ~ 11352387 (+) True G37525
TU50377 other downstream 1383883 11390739 ~ 11394334 (+) False LOC120557336
TU50430 other downstream 1773322 11780178 ~ 11805394 (+) True G37597

Expression Profile