RNA id: XM_039798609.1


Basic Information

Item Value
RNA id XM_039798609.1
length 817
RNA type mRNA
GC content 0.43
exon number 8
gene id thoc7
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 9921081 ~ 9926482 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTCTCCTCTGTGGCCAATCATCGCCGTCTGCTTTGTTCACTTCCTGCTGTTCAATAAAGTTTATCTAGCTCGACACAGACATGGGTGCTGTTACAGATgATGAAGTTATTCGGAAACGTCTTCTTATTGACGGGGACGGAGCTGGAGATGATCGCCGAATCAATGTGCTGCTTAAGAGTTTCACCAAATGGTGCAACTCGACTGGGACCCCAGAGGAAGGGTTCACACAGTATCAAAGGATGATGGGCACACTGGCCCAGTGTGAATTCTCCATGGGGAAGACGTTGATGGTTTATGACATGAATCTGCGTGAAATGGAAAATTATGAGAAAATCTACACTAACATAGAACAAAACATCACGTCTGCTCACGAGAAGATAGCAGAATGCAAAAAAGAAATTCAGCGAGCAAAGAGAATACGGAAGAATCGGCAAGaGTACGATGCTTTAGCTAAGGTTATCCAGCAGCACCCAGACCGCCACGAAACACTAAAGCAGTTGGAGGCGCTTGACAAAGAACTCCAGTTACTGTCTCGCACCAAGGAGAACGTAGATGCAAAGTTGGAATTAAGAAAGAAGCAGTTCCATGTGCTACTCAGCACCATACAGGAACTACAGCAGACACTCGAGAATGACGAGAAATCTGACAATGACGACATCAATCAAGAGAGCCCTGCAGAGAATGGGGAATGAATTTGAAGACCTCCGGACTGAAATAAATAGAAGTGAACCGCTTTtaaatgattttgtttttgcttaaaaatactttttgtatACATGTATTTTTGAATAAATTTGACTTGTGCACAAAttcaaa

Function

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0000445 THO complex part of transcription export complex cellular_component

KEGG:

id description
K13176 THOC7; THO complex subunit 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49739 lncRNA upstream 148853 9761047 ~ 9772228 (+) False prickle2b
TU49718 lncRNA upstream 187730 9731857 ~ 9733351 (+) True G37064
TU49623 lncRNA upstream 510420 9359504 ~ 9410661 (+) False G37023
TU49621 lncRNA upstream 510420 9400334 ~ 9410661 (+) True G37023
TU49579 lncRNA upstream 690158 9230464 ~ 9230923 (+) False G36990
TU49772 lncRNA downstream 1553 9928035 ~ 10006856 (+) True G37104
TU49780 lncRNA downstream 31353 9957835 ~ 9962577 (+) True G37112
TU49854 lncRNA downstream 125646 10052128 ~ 10052337 (+) True G37163
TU49868 lncRNA downstream 278307 10204789 ~ 10206757 (+) True G37177
TU49881 lncRNA downstream 330768 10257250 ~ 10260329 (+) True G37186
XM_039797833.1 mRNA upstream 34956 9880028 ~ 9886125 (+) True psmd6
XM_039797359.1 mRNA upstream 64425 9760233 ~ 9856656 (+) False prickle2b
XM_039797360.1 mRNA upstream 64425 9835060 ~ 9856656 (+) True prickle2b
XM_039797358.1 mRNA upstream 166583 9703011 ~ 9754498 (+) True adamts9
XM_039797038.1 mRNA upstream 274148 9495285 ~ 9646933 (+) False magi1b
XM_039796495.1 mRNA downstream 87364 10013846 ~ 10016764 (+) True lyar
XM_039796497.1 mRNA downstream 90425 10016907 ~ 10029487 (+) False tmem128
XM_039796498.1 mRNA downstream 92192 10018674 ~ 10029487 (+) False tmem128
XM_039796496.1 mRNA downstream 92195 10018677 ~ 10029487 (+) True tmem128
XM_039796493.1 mRNA downstream 103104 10029586 ~ 10038874 (+) True otop1
unassigned_transcript_198 other upstream 1098350 8822660 ~ 8822731 (+) True trnae-cuc_13
unassigned_transcript_197 other upstream 1098773 8822237 ~ 8822308 (+) True trnae-cuc_12
unassigned_transcript_195 other upstream 1104684 8816325 ~ 8816397 (+) True trnar-acg_14
unassigned_transcript_192 other upstream 1113393 8807616 ~ 8807688 (+) True trnar-acg_13
unassigned_transcript_191 other upstream 1179304 8741706 ~ 8741777 (+) True trnae-cuc_8
TU49895 other downstream 378705 10305187 ~ 10309996 (+) True G37197
TU50184 other downstream 1070748 10997230 ~ 10998137 (+) False G37397
TU50347 other downstream 1425596 11352078 ~ 11352387 (+) True G37525
TU50377 other downstream 1464257 11390739 ~ 11394334 (+) False LOC120557336
TU50430 other downstream 1853696 11780178 ~ 11805394 (+) True G37597

Expression Profile