RNA id: TU49718


Basic Information

Item Value
RNA id TU49718
length 1495
lncRNA type intronic
GC content 0.37
exon number 1
gene id G37064
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 9731857 ~ 9733351 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TACATCTTTGTACTATATACATTTTTGAAATGGCTATTGTATCAAGATTTCAATTTGTCTCAAGGCacatgtgggtttttttttaacagaagttACTAATCTTATTTAGacactttattttacagttaGTTTTTTTACTTTCTGCTATGAAACAAACAGTGGTGTTGCCCCAAAATTACATTGACATCAATGCGTGAATATGTTGACTCAAAAGTTCCTGAAACGTCCAGTATCAGTAGTAAACACCAGCAAACAACAGCTGTACTAgcactgtaaaataaaatgtctcaCAGAGTTTGTGGTAATTAGTACTAACAATTAGTAGTAACAGCCATTGTATTCCAGTTTGGCAGAGGGTTTTGACCCAGATTTCATTAGTGTGGCCAAAACAATAGGTTTAAAGCTCTCTGCTCCAAAGGTGCTTGATATGAGTGTATTTATATTGTGTTAGTTAATGTTTTCTTTGTACTTGGAGTTGCTAAATATGCTATGCTCAACAATACCTCATTTGGAACAAAACACAACTCTTCTAGCCATTAAACTATGATAACCTCCTACACTAAAGTGGTGCTTTGGCCAAACAAGGGAGATTTAAATATCAAGAATGAACCATCACATTTTTGGTTAGGTGTTTATTGTGGCACATTgctttttgatgctgccttttctgtactttttatttctttccatGAGCAGTTAGTTGATTGCTAATCAGATTGATCAGCTTAATGCAAAGTGTATCACAGATTTGATGAAATAATGTTGAATTGTCTTTGAATGTCAATCAAACCACTTGTTCAACCTTGAAGAGAATGGGCTGTTAAAATGACGTACTTTGAACACTTATACCTGTGACCACGGGAAGTTAATAGTGTTTTGTATCCAGAGCTCTAACTCTGAGCCAACCTAATGTGTCTACCTCAGTCTCTGTTTTGATTGCCCCCCTGCCGTATCTTTCTCTCCCTTGCACTGGAGGGATTTTGGCTGACTAAGATTAAGCATGAGTTGTTAAGGCTACCCAGTGCAGTTGATggacagggtgtgtgtgtcatttccCACCTTGTATTGCAATCCTGTTGAAGACAGTAAAAACTGATCCAAAATCTGTGGTTAGGGGCACCATTTGCCTGCAGCCCACCCAGTTGACTCCTCCTGGTCATAAACATCTGTACTGACATCACACCTTATTCTAAGGGGCTTGTTAAACAGCAGTGAGAACATTTTTTAACCACACATCATTTACTAATGAGAACTATGCTTGTAATGACTCCCACAAGTGTGATTGTAAGGCAGCGTAAAATTTAGGTTGAATCAGTGAAAGCAGAACACAGTATTTACAAGCACATCCTATTATTCCtctttattttcacttttcaGTCTTAGCAGTTTGAGTCCTTGTGGTCAACCTCTTGGTGTAAATAGCAGTACAGATCAAACACCGTATCAACAGGCTTTTGAAATAAGCATATTGTATTTATCTTATTCACAGATGGCA

Function

GO: NA

KEGG:

id description
ko04512 ECM-receptor interaction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49623 lncRNA upstream 321196 9359504 ~ 9410661 (+) False G37023
TU49621 lncRNA upstream 321196 9400334 ~ 9410661 (+) True G37023
TU49578 lncRNA upstream 500903 9230464 ~ 9230954 (+) True G36990
TU49579 lncRNA upstream 500934 9230464 ~ 9230923 (+) False G36990
TU49580 lncRNA upstream 501494 9230080 ~ 9230363 (+) True G36991
TU49739 lncRNA downstream 27696 9761047 ~ 9772228 (+) False prickle2b
TU49772 lncRNA downstream 194684 9928035 ~ 10006856 (+) True G37104
TU49780 lncRNA downstream 224484 9957835 ~ 9962577 (+) True G37112
TU49854 lncRNA downstream 318777 10052128 ~ 10052337 (+) True G37163
TU49868 lncRNA downstream 471438 10204789 ~ 10206757 (+) True G37177
XM_039797029.1 mRNA upstream 81520 9495284 ~ 9650337 (+) True magi1b
XM_039797033.1 mRNA upstream 81520 9495284 ~ 9650337 (+) False magi1b
XM_039797030.1 mRNA upstream 81520 9495284 ~ 9650337 (+) False magi1b
XM_039797034.1 mRNA upstream 81520 9495284 ~ 9650337 (+) False magi1b
XM_039797032.1 mRNA upstream 81520 9495284 ~ 9650337 (+) False magi1b
XM_039797359.1 mRNA downstream 26882 9760233 ~ 9856656 (+) False prickle2b
XM_039797360.1 mRNA downstream 101709 9835060 ~ 9856656 (+) True prickle2b
XM_039797833.1 mRNA downstream 146677 9880028 ~ 9886125 (+) True psmd6
XM_039798609.1 mRNA downstream 187730 9921081 ~ 9926482 (+) True thoc7
XM_039796495.1 mRNA downstream 280495 10013846 ~ 10016764 (+) True lyar
unassigned_transcript_198 other upstream 909126 8822660 ~ 8822731 (+) True trnae-cuc_13
unassigned_transcript_197 other upstream 909549 8822237 ~ 8822308 (+) True trnae-cuc_12
unassigned_transcript_195 other upstream 915460 8816325 ~ 8816397 (+) True trnar-acg_14
unassigned_transcript_192 other upstream 924169 8807616 ~ 8807688 (+) True trnar-acg_13
unassigned_transcript_191 other upstream 990080 8741706 ~ 8741777 (+) True trnae-cuc_8
TU49895 other downstream 571836 10305187 ~ 10309996 (+) True G37197
TU50184 other downstream 1263879 10997230 ~ 10998137 (+) False G37397
TU50347 other downstream 1618727 11352078 ~ 11352387 (+) True G37525
TU50377 other downstream 1657388 11390739 ~ 11394334 (+) False LOC120557336
TU50430 other downstream 2046827 11780178 ~ 11805394 (+) True G37597

Expression Profile