psmd6 (psmd6)


Basic Information

Item Value
gene id psmd6
gene name psmd6
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 9880028 ~ 9886125 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039797833.1
ACGCTCCGGCGGAAACAACACAGTCCAGTGTTTTCCGTAGTCATCGTTGACTAACGCTAGCTGGTAACGGCGAGTAACAGTTAGTGAACTCTGTCTGCACAAAGAAAGCCTTCAGTTTGTgattttgtttctatttttttgaaCTAAAAATGCCGTTAGAAAACCTGGAGGAAGAGGGTCTGCCCAAAAACCCTGATCTGAGGATAGCACAGCTCAAGTTCCTGCTCACAATGGACGGTCACCGACAGGATGCTAAAGTGAAGACTGAGCTCATGGACGCGATCAAAGCTAACAATATGGCACCGTATTATGAGGGTCTGTGTAAGGACCTGAAGTGGCAGCTGGACGGTGACCTGCTGAGTAAGATGAAGAAGGCCAACGAGGAGGAGCTGAAGCGCCTGGATGATGTGCTGGAGGATGCAGAGAAGAGCCTGGGAGAGAGCGAGATACGAGACGCCATGATGGCCAAAGCTGAATACCTCATCAGAATTGGAGACAAGGAGGGCGCCCTAACAGCCTTCAGGAAGACCTATGACAAGACAGTGGCTCTGGGTCacagactagatatcgtcttctACCTGCTGAGGATCGGACTCTTCTACATGGATAGTGACCTCATCACACGCAACTCCGAGAAGGCCAAGAGCCTCATCGAGGAGGGGGGAGACTGGGACAGGAGGAATCGTCTGAAGGTCTACCAGGGCCTGTACTGTGTGGCCATCAGGGACTTCAAGCAAGCTGCCGAGCTCTTCCTCGACACAGTCTCCACCTTTACCTCTTACGAGCTCATGGACTACAAGACCTTCGTCACCTATACAGTCTACGTGTGCATGATTGCCCTCAAAAGGCCTGACCTGCGTGAAAAGGTAATAAAGGGAGCTGAGATCTTGGAGGTGCTGCACAGTCTCCCTCCAATTCGCCAGTATCTTTTCTCCCTCTACGAGTGCCGTTACTCGGTCTTCTTCCAGTCGCTGGCCACGGTGGAGCAGGAGATGAAGAAGGACTGGCTTTTTGCGCCACACTACCGCTACTACGTGAGGGAGATGAGGATCCAGGCCTACAGCCAGCTGCTAGAGTCCTACCGCTCCCTCACCCTGGGCTACATGGCTGAGGCCTTTGGTGTCAGCACAGAGTTCATCGACCAGGAACTGTCCCGATTCATAGCTGCTGGACGTCTCCACTGTAAAATTGACAAAGTGAATGAGATTGTGGAAACCAACAGACCTGATAGCAAAAACTGGCAGTACCAAGAAACCATCAAGAAGGGCGACTTGCTGCTGAACAGAGTCCAGAAGTTGTCGAGAGTTATCAACATGTAACCACGGTGGCCATATTTTTATGCAAGGACGACTTGCATTAGTCTTGATATACCGGAACCAGTAGTTTGTCTGACAAAGTGACtcttatattgtgtatataatAAAAATTTGTTTAACTGTT

Function

symbol description
psmd6 Predicted to enable enzyme regulator activity. Acts upstream of or within lens fiber cell differentiation and proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be part of proteasome regulatory particle. Is expressed in ciliary marginal zone; head; and lens epithelium. Orthologous to human PSMD6 (proteasome 26S subunit, non-ATPase 6).

NR:

description
26S proteasome non-ATPase regulatory subunit 6

GO:

id name namespace
GO:0070306 lens fiber cell differentiation biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process

KEGG:

id description
K03037 PSMD6, RPN7; 26S proteasome regulatory subunit N7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039797833.1 True 1440 mRNA 0.50 8 9880028 9886125

Neighbor

gene id symbol gene type direction distance location
adamts9 adamts9 coding upstream 125530 9703011 ~ 9754498 (+)
magi1b magi1 coding upstream 229691 9495284 ~ 9650337 (+)
lrig1 lrig1 coding upstream 481425 9360191 ~ 9398603 (+)
suclg2 suclg2 coding upstream 650047 9104336 ~ 9229981 (+)
tafa4b LOC108244092,LOC101483849,LOC102775681 coding upstream 1007862 8832264 ~ 8872166 (+)
thoc7 thoc7 coding downstream 34956 9921081 ~ 9926482 (+)
lyar lyar coding downstream 127721 10013846 ~ 10016764 (+)
tmem128 tmem128 coding downstream 130782 10016907 ~ 10029487 (+)
otop1 otop1 coding downstream 143461 10029586 ~ 10038874 (+)
drd5a drd5 coding downstream 154175 10040300 ~ 10044549 (+)
G37064 NA non-coding upstream 146677 9731857 ~ 9733351 (+)
G37023 NA non-coding upstream 469367 9359504 ~ 9410661 (+)
G36990 NA non-coding upstream 649074 9230464 ~ 9230954 (+)
G36991 NA non-coding upstream 649665 9230080 ~ 9230363 (+)
G36988 NA non-coding upstream 840259 9039463 ~ 9039769 (+)
G37104 NA non-coding downstream 41910 9928035 ~ 10006856 (+)
G37112 NA non-coding downstream 71710 9957835 ~ 9962577 (+)
G37163 NA non-coding downstream 166003 10052128 ~ 10052337 (+)
G37177 NA non-coding downstream 318664 10204789 ~ 10206757 (+)
G37186 NA non-coding downstream 371125 10257250 ~ 10260329 (+)
prickle2b prickle2 other upstream 23372 9760233 ~ 9856656 (+)
G36744 NA other upstream 1651308 8227762 ~ 8228720 (+)
hcfc1a hcfc1,LOC102799381,LOC102206223 other upstream 2573685 7288907 ~ 7306343 (+)
G36458 LOC100304472,LOC107385856 other upstream 2607660 7209996 ~ 7272368 (+)
si:dkey-245f22.3 NA other upstream 2692814 7183199 ~ 7187214 (+)
G37197 NA other downstream 419062 10305187 ~ 10309996 (+)
glrx glrx other downstream 501783 10387908 ~ 10396187 (+)
G37397 LOC102299939,LOC103353648,LOC103366902,LOC102208776,LOC100700987,LOC104921056 other downstream 1111105 10997230 ~ 11012909 (+)
G37525 evc2 other downstream 1465953 11352078 ~ 11352387 (+)
LOC120557336 LOC103359259,LOC100704408,LOC101476502,LOC102796717,LOC102216118 other downstream 1499059 11385184 ~ 11394398 (+)

Expression


Co-expression Network