LOC120558172 (LOC104927939,LOC104961953,LOC100699369,LOC102798792,LOC103359250)


Basic Information

Item Value
gene id LOC120558172
gene name LOC104927939,LOC104961953,LOC100699369,LOC102798792,LOC103359250
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 11236707 ~ 11243365 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039799105.1
TTGCAGTGCAGCCAGACGCCAGCAGCAGCATCCAGCTCGGAGGGAACGCGGCGCACAACCCCAGCTGGCCATATTGTACACCAGCTCCTCTCCGCAAATCGGCTGCGTCACACCTAACAAAACATATAGCGGCGCTGTAGCAATAAAGTCACCACATCAGGAGGAAAAACGctgttttcaaaacactactcGGCTGAGCTGtTTGGTGTTTTTTCGTGCAGGGAAAATGGTTAAACTGGGGAATAATTTCAGCGAGAAAAATAACGGCAAGGTGGTTTCTGAAGACGGATTTGACACCATCCCTCTCATCACACCACTAGATGCCAGTCAGCTGCAGTTTCCTCCACCAGATAAGGTGGTAGTGAAGACAAAGGCAGACTATGATGGTGAGAGCAAGAAGGGAAAGCTACGATCTCCTAAAATCGCAGAGTTCTCAATAAGCATCATTGAAGGCGTATCTGAGCGACTCAAGGTGACCTTGCTTGTGATCTGTGCGCTGGCCTTCCTGGTGTGTGTGGTCTTCCTGGTCGTCTACAAGGTCTACCAGTATGAGCAGCCTTGCCCCGACAGCTTTGTTTACACGCAAGGTCGCTGCATGCCGGCTGGGATGTATGGCAACTACCCCCCTCAGGGCCCTGGGGGCCGCGGGCGCCTCTTTACCCTCATAAACCACTACAACATAGCCAAGCAGACCATCACCCGGTCAGTATCACCATGGATGACCATCATGTCTGAGGAAAAGGTCACCCAGCAGGAGACAGAGACTGCCCAGAAACTGGCTTAACCAACCTGGGCTTAACCAACCTGGGATACTGGGATCAGGAGGTGGCCTAACCTGCTGctcaaagaaataaataaataatatggtTGTGCCATTCAAGCAAACCTCAGAGTCCCGTGGCTTTTTGTGGGTGAAAAATCAACTTCTCTTGCCTGAGGTGCTCTGCTGCCTTGTTAATCTAGTTTGGTCCGCTGATGTGTACTGTAGCAGGAAATCTGTGGAAATTAGTTTTCAGCAAAGCAAGCATTACCGTTGGGTGGATTCATGGTTTGTTTGAATCGCATATGTTGTTATTTATTTGCACTTAAAAACAGAGTGGCAAACGTGTAGATAAAGTCACACggatacaaacacagacacacactcactgtctttgtacatacacatatgtaacaaAACTCTCTTTAGTACTCACATTGTGAAATGACTGCACCATCTCGTGTCTGCGTCGCTTGTTTTAACGCACATGCACGCAGGACTCTAAACACAATCCGTTTGCTTTGAGCTCCCCCCCAAATACATCAAGTACTGATAGCGCATGTCAGACCTCACGAGGTCCAGCAAGTGGTACATGTCTCACAAGGCGCCAAAGTTTGCAGCATATTTGCCACTGAGGTCATCTATGTCAAAATATTTTACTGTCATGATATTGTGAATAAATGAGGCTTGACCTGGAGGAAGCCTTTTAACCAGCgaaaaaataactattttaatGGTGTTGTTTTGTCACAGCCCATACTGCTCTCTGCATATACTGCTGTTAAGGAGTTTTAAGTACTCGATGCATTGTCTTTTTAACCAGCATTAATGATTGTCTACGTTCATTTAAACTACTTGTGAACACCATGTGCTTTTTTTTGCTGGCCACTTAATGGTTACTTTTCATAGCATACATTTTATGCTACTGTATTGAATGTTTTTGCATTGCTAGTGAAGCCACTGTATTGTGCAATGCTTTGCATTGATTGTCACCATAGATGGCTGTTGGTAGCCAGATGCTAGACTTAGGTTGATGTAGTGGAACAATCTGACAGTAGTCGCTTGTACCGATGCTTTCTTCTGTATTTGTCATTTAAACTTATTAAACTGTTACAAATGATGTACTTTTTTCAAACAATGTAAGGATTGCCATTAAAGTGCATTTGGtacataaaaatgttaaatgaaaaactgaaaaataaagtgCCCACATTTCACACCAACA

Function

NR:

description
PREDICTED: neuron-specific protein family member 1

GO:

id name namespace
GO:0007212 dopamine receptor signaling pathway biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0048268 clathrin coat assembly biological_process
GO:0005634 nucleus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0032051 clathrin light chain binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039799105.1 True 1985 mRNA 0.44 5 11236707 11243365

Neighbor

gene id symbol gene type direction distance location
aggf1 aggf1 coding upstream 10125 11219389 ~ 11226582 (+)
r3hcc1 LOC104945372 coding upstream 68901 11156708 ~ 11167806 (+)
LOC120556881 LOC106956972,LOC106927802,LOC104927944,LOC102076673,LOC103366911 coding upstream 80293 11153550 ~ 11156414 (+)
rplp0 rplp0,LOC102776933 coding upstream 84421 11149713 ~ 11152286 (+)
LOC120556879 pxn,LOC107385500,LOC103366908 coding upstream 89265 11115242 ~ 11147442 (+)
LOC120558115 NA coding downstream 20145 11263510 ~ 11266070 (+)
msx1a msx1 coding downstream 87191 11330556 ~ 11332646 (+)
LOC120557333 evc coding downstream 118041 11361406 ~ 11375812 (+)
LOC120557335 LOC103359258,LOC101476783 coding downstream 133170 11376535 ~ 11382180 (+)
myl9b LOC100697131,LOC101062217,LOC105901900,LOC103386121,LOC106565219 coding downstream 650225 11893590 ~ 11905754 (+)
G37383 fam219a non-coding upstream 293081 10936683 ~ 10943626 (+)
LOC120557560 NA non-coding upstream 307320 10928477 ~ 10929387 (+)
G37370 kiaa1161,LOC103376128 non-coding upstream 320908 10910297 ~ 10915799 (+)
G37367 NA non-coding upstream 439283 10796979 ~ 10797424 (+)
G37363 NA non-coding upstream 575383 10660866 ~ 10661324 (+)
G37521 NA non-coding downstream 101375 11344740 ~ 11345059 (+)
G37522 NA non-coding downstream 103721 11347086 ~ 11347671 (+)
G37523 NA non-coding downstream 105771 11349136 ~ 11349368 (+)
G37524 evc2 non-coding downstream 106185 11349550 ~ 11349773 (+)
G37526 NA non-coding downstream 110911 11354276 ~ 11354743 (+)
G37397 LOC102299939,LOC103353648,LOC103366902,LOC102208776,LOC100700987,LOC104921056 other upstream 223798 10997230 ~ 11012909 (+)
glrx glrx other upstream 840520 10387908 ~ 10396187 (+)
G37197 NA other upstream 926711 10305187 ~ 10309996 (+)
prickle2b prickle2 other upstream 1380051 9760233 ~ 9856656 (+)
G36744 NA other upstream 3007987 8227762 ~ 8228720 (+)
G37525 evc2 other downstream 108713 11352078 ~ 11352387 (+)
LOC120557336 LOC103359259,LOC100704408,LOC101476502,LOC102796717,LOC102216118 other downstream 141819 11385184 ~ 11394398 (+)
G37597 NA other downstream 536813 11780178 ~ 11805394 (+)
G37714 NA other downstream 1009701 12253066 ~ 12254974 (+)
LOC120557851 krt18,LOC105931717,LOC101469154 other downstream 1031395 12274760 ~ 12278624 (+)

Expression


Co-expression Network