RNA id: XM_039797567.1


Basic Information

Item Value
RNA id XM_039797567.1
length 3604
RNA type mRNA
GC content 0.47
exon number 20
gene id LOC120557333
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 11361406 ~ 11375812 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTCTCCTGTCTTGACGCAGCTCGCTTCTCATCTTAAATCTCCGTACACCCATTGGTTCCGAGCACCAATACATGtcgttttgggggaaaaaaagttttgcTGGAAGAAGTCGTTTCAAATTGTAGGTTGCTTATCTatgtttcaaaatgtaaaacctTTTAGAGCGTAACACGTTGAAAATCATATgagattatttttacagtccGTGTTAAGTATGCGAGCAAGAAATTAAATCGTAAagagtaagctaacgttactttcCTTGAGAAAAGTTGTTAGCTAACGTAAGATGTTACAAAATGCTAACATTCATAACGTTAGTTGTCATAACGTAGCTacatgaaaaatgacagagcaGTGCCTGTTGGAGAGATGTCGCACtgatgtgttggtcagtttctCCGAGTCGCTGCACATCTACACAGGGCTGTTAACAGTGGCTACAGTGTGTGGAGGGCTTTCGGGAATATTAGCTGTTGCTCTTTTGTACGTCTTCTGTCTGAAGCCGTTGCTGTTGACGAGACAAGGTTACAATGCAAGGCGGCTGCTTGAACCTGACAACAACCAAAGTGACCATGTCAGTAACGGCAGAAAGGAGGCTCCAATAAGTGGCACATCACATGACAAAGAGAAGAAGCAGCCACCCATGAACAGTGATGTGGCTGCATTTGCATCCAGAGCAAAGGTGGTTTATCCCATCAACCAAAAATACAGACCTTTAGCAGACGGAGCGTCCAATCCATCACTGCATGAGCACTCCAAGTTGCCAGCAATGCCTAACGATGAGTCATCCTCCTCCATGGACGGAGAGTCTCTGAGCCAAGAGCAGGACAACGACGACAGCAGTCAGTTTATCTCCTCCTCGGTGGTCCCCAAGAGCCTGCAGAACCAGAGCTTCACCAGAGTCTCTCACTACCCTCGCTCACTGACACAACCAGATTTTGGGGGCAGGATCAGCCTTTACTGTTTGGCCCTGCAGGATATACAACAACATTGCTCCCAGCTTCAGGAAGAAAAATGTCTGATGTTTCTTCAAATGGTGAAAATAATATTCAGCTGTCATTTTCCAAAAGACAAATGTGCTGCTGACTTCTCCAAAAATATTCTTCAAATGCAAGAAAAGGAACTGAATGAGCTGAAGAAACAGTTGCCAACAAGCCACACTGCCAGCGAGAAAAATTATGACACTCCCTGTACTCTGGAAGAAATAGAGAGAGCCCAAAAAGATTTTCTTGAACGTGGCCTTCAAGTGTCCAGACGTTTCAGCAAACAGGTGGAGGACTTGTGCCAGCATCTGCTGAAGAAGCCCAGCATTTTCTCTCCAGATGAAGCCCAGGGTGtgattctctctctcatccAGACTCTTCTGTTAGTAGAGAACCATCTGATGAACACACAAGAAGCTGATCTTAAGAGGATCCAGCAAAAGTTGTTGTGGTGGGAGGAGCTGACGGGGCTTCTCCAATCCCAACCTGCCTTGCTAAGGCTGGAAGTGTCTCTGAGGCAGGGCTTGATAGCAACAACACTGGAGCAGCTGACGAGTGATGACGTCTTGACCTTTAGCCACATGGAAAAGATACTTTCAGAGGTCCAGGCAACTCTGACCGAAGGCCTTCAACAGTGCACAGAGGAGTGTACAAGGAAGACGAAGGAGCTGGTGAATGACAAGTGCAGCAGAATGGAGTCCAAGAAGAAGAAGCTTTTGAGGAGCCAGACCAAGGAGAAGAGCTGCGCCCTGGAACTGAGACAGCCTCACGGTGACCTACAGCAGCTCACCAAGGTGTACCAGGAGCTGCTGATGAAACACAGACAACAGATTTCTGACTCGGAGCAGCAGCAGGACAACAGGGTGGCTGAAGCCCTCTGTGACCATTGGAAGAAACTCCGTGCCTCCTGGTCAAAGAGGCTTGGAGAGCTGGCCAAGGACATTTTCCTCACCGCTGTCCCTGCCCAGTCAAAGGTCTCTGCTGAGCGCTGCGAGAATCTGTGGTTGGATCTGGAGCAGGAGCTGGTTGCACAGCTGCAGCAGGCAGAGTGCACTACCAAGGTGCAACTGGAGGACATGAGGGCTCAGCTGGATAAAGATGGACAGCTGTGGAGTGAGGAGATGGCTCTGGTGCAGGCCTGTCTCAAACATCTGAGCGAACAGCAGATGACAATCCTGCGAGCCATGTTGGCCAGACAGAGCTACACACTCAACAGCAACGTGTGGAAGTTGATAGAGAAGAAACATGAGCACCTGTTGGTGGCGGTGCAGAGGTACTTTGTGGTCAGGCACTTCTGTTTGCACATGCTGAAGGAAATGAGGCTGTCCAAGCTGAAAGCACTCTCTCAGACTGATTTCAGGGCTGTGCTAATGGAAGATCCCAGTAAAAGCCAGTCCTGTGTCAATTCAGCTCTCAAGAATAGCAGTGCCAGCCTAGCAGAGAGGCATCTGGGTCCAGAGAGTCAGCTGGTGGGCCACAGCTTCCAGCAGGAGTTTCTGTCTGAACTGGAAACAGGGACGGAGCTTCTTCAGAGCCATGCACAGCTGGTGTTGGGCAACGCCCTCAGCCACGCCATCCAACAGATGATGGAGACCCCACCCACTGAACCGCAGACCTCTCCCAAACAGGACGATGGCTTGAAGCACTACCTGACAGAGGCTGCCTCGGAGAGTGTGTATGTGACCAAAGATTCTCTCACTGCACTGGTCCAAAGCTACTATTCCCACCTACAGGACATCATCAAGAAATTACAGCAGGATCAGTCAAACATAAACCACGAGGTGAATGAGAACCATGAGAGGAGCAGTCAGCTGAACAGATCCTTGCTGAGGGAGCTGGTGAACTGGGGCAAAAAACCCAACTCGGCTGAGTTTCAACAGAGGGTTGAACTCCACAAAAGGAGGGTGTTGGAGCAGTGTGATCTGGACCAGGAAACGATATATGAGGAACTGAGGTGGAAGAAAGTAGCCCAGGATCAGAACATGGAAAAGATCAAAGCCCAGCTGCTGGAGGCAGAAGAAAGCTTCATAACTGAGCTGGCAGCCTTGGCCCGGGTCTCTCTCCACAGCCCAGACCCAGAACCCAGCGGTGAGGAGGACAACACTGGTAATGAGAGTGCTACTATATTGGACCTGTTGTCCCTGAACCCAGCATTAGATCCTGCCTTGAATCCTTCACTGACCCCAACGATTGTAACTCCAGTGGTGAAATCAAAaccaaagaagaaaagagaacgAGAATCTCATCTCAGCTGAAATCTTAACACAGTACTGTTCACATATTCATGCAGTCATGTCCTGTAAAAAAGTTTACTCTTATTATAGTTGGTGCATCAGGAAGTAATGCCACTACTGGTCTGCTGGTACCAATTGTGTTGTTAGGAAGGTACCTCAGCTTTGTTTGCATTAAGCCAGAGGGATCTGTCCTAATTTATGTATAAGTGGACTGTCTAGtctaatttaaaattttctAGAAGTGTGCTTGAATTAGGTTACTGAAATATTGCAATGGtgacaaaaacaatgtatttttctCAATTAGTTGGTATTTTTGTAAATTCCATGTACTGTCaaaaatccaataaaataaCAAAGCAGATTATCTTTTTAAtgcatta

Function

GO:

id name namespace
GO:0007224 smoothened signaling pathway biological_process

KEGG:

id description
K19605 EVC1; ellis van creveld syndrome protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50351 lncRNA upstream 1158 11359773 ~ 11360248 (+) True G37528
TU50349 lncRNA upstream 5046 11355629 ~ 11356360 (+) True G37527
TU50348 lncRNA upstream 6663 11354276 ~ 11354743 (+) True G37526
TU50346 lncRNA upstream 11633 11349550 ~ 11349773 (+) True G37524
TU50345 lncRNA upstream 12038 11349136 ~ 11349368 (+) True G37523
TU50383 lncRNA downstream 32164 11407976 ~ 11416351 (+) True G37553
TU50390 lncRNA downstream 45711 11421523 ~ 11421722 (+) True G37560
TU50391 lncRNA downstream 46430 11422242 ~ 11422899 (+) True G37561
TU50397 lncRNA downstream 138950 11514762 ~ 11515088 (+) True G37567
TU50419 lncRNA downstream 283488 11659300 ~ 11676028 (+) True G37588
XM_039796527.1 mRNA upstream 28760 11330556 ~ 11332646 (+) True msx1a
XM_039799019.1 mRNA upstream 95336 11263510 ~ 11266070 (+) True LOC120558115
XM_039799105.1 mRNA upstream 118041 11236707 ~ 11243365 (+) True LOC120558172
XM_039797528.1 mRNA upstream 134824 11219389 ~ 11226582 (+) True aggf1
XM_039797569.1 mRNA downstream 723 11376535 ~ 11382180 (+) True LOC120557335
XM_039797570.1 mRNA downstream 9372 11385184 ~ 11394398 (+) True LOC120557336
XM_039797802.1 mRNA downstream 517778 11893590 ~ 11905754 (+) False myl9b
XM_039797801.1 mRNA downstream 524964 11900776 ~ 11905754 (+) True myl9b
XM_039798726.1 mRNA downstream 705293 12081105 ~ 12111841 (+) True LOC120557971
TU50347 other upstream 9019 11352078 ~ 11352387 (+) True G37525
TU50184 other upstream 363269 10997230 ~ 10998137 (+) False G37397
TU49895 other upstream 1051410 10305187 ~ 10309996 (+) True G37197
unassigned_transcript_198 other upstream 2538675 8822660 ~ 8822731 (+) True trnae-cuc_13
unassigned_transcript_197 other upstream 2539098 8822237 ~ 8822308 (+) True trnae-cuc_12
TU50377 other downstream 14927 11390739 ~ 11394334 (+) False LOC120557336
TU50430 other downstream 404366 11780178 ~ 11805394 (+) True G37597
TU50615 other downstream 877254 12253066 ~ 12254974 (+) True G37714
XR_005639029.1 other downstream 898948 12274760 ~ 12278624 (+) True LOC120557851
TU50647 other downstream 1010359 12386171 ~ 12387175 (+) True G37730

Expression Profile