RNA id: TU50391


Basic Information

Item Value
RNA id TU50391
length 467
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G37561
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 11422242 ~ 11422899 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tccttttcgccttaattcgattatatttagagtttgaatttcgtcacgccacttacacaacatctaaatatatgtcttataaacctaacaacggtgtccgatttcaatttaatgaatatttgtgaaaactaggtgtttcgttagctgcgactgtcccttcaatcttaGCAaggtgtagctacaaaccacggatagttagctagcttccttttcgccttaattcgattatatttacagtttgaatttcgtcacgccacttacacaaaatctaactatatgtcttataaagctaacaacggtgtccgatttcaagttaatgaatatttgtgaagacaaagtgtttcgttagctgcgactgtcccttcaatcctagctatgtgtagctacaaaccacggatagttagctagctagcttccttttcgccttaattcgattatatttacagtttgaatttcgtcacgccact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50390 lncRNA upstream 520 11421523 ~ 11421722 (+) True G37560
TU50383 lncRNA upstream 5891 11407976 ~ 11416351 (+) True G37553
TU50351 lncRNA upstream 61994 11359773 ~ 11360248 (+) True G37528
TU50349 lncRNA upstream 65882 11355629 ~ 11356360 (+) True G37527
TU50348 lncRNA upstream 67499 11354276 ~ 11354743 (+) True G37526
TU50397 lncRNA downstream 91863 11514762 ~ 11515088 (+) True G37567
TU50419 lncRNA downstream 236401 11659300 ~ 11676028 (+) True G37588
TU50427 lncRNA downstream 352442 11775341 ~ 11857697 (+) True G37595
TU50441 lncRNA downstream 438574 11861473 ~ 11862970 (+) True G37606
XR_005638970.1 lncRNA downstream 601431 12024330 ~ 12024737 (+) True LOC120557465
XM_039797570.1 mRNA upstream 27844 11385184 ~ 11394398 (+) True LOC120557336
XM_039797569.1 mRNA upstream 40062 11376535 ~ 11382180 (+) True LOC120557335
XM_039797567.1 mRNA upstream 46430 11361406 ~ 11375812 (+) True LOC120557333
XM_039796527.1 mRNA upstream 89596 11330556 ~ 11332646 (+) True msx1a
XM_039799019.1 mRNA upstream 156172 11263510 ~ 11266070 (+) True LOC120558115
XM_039797802.1 mRNA downstream 470691 11893590 ~ 11905754 (+) False myl9b
XM_039797801.1 mRNA downstream 477877 11900776 ~ 11905754 (+) True myl9b
XM_039798726.1 mRNA downstream 658206 12081105 ~ 12111841 (+) True LOC120557971
XM_039798915.1 mRNA downstream 691109 12114008 ~ 12127710 (+) True tgm2b
XM_039798481.1 mRNA downstream 851862 12274761 ~ 12278624 (+) False LOC120557851
TU50377 other upstream 27908 11390739 ~ 11394334 (+) False LOC120557336
TU50347 other upstream 69855 11352078 ~ 11352387 (+) True G37525
TU50184 other upstream 424105 10997230 ~ 10998137 (+) False G37397
TU49895 other upstream 1112246 10305187 ~ 10309996 (+) True G37197
unassigned_transcript_198 other upstream 2599511 8822660 ~ 8822731 (+) True trnae-cuc_13
TU50430 other downstream 357279 11780178 ~ 11805394 (+) True G37597
TU50615 other downstream 830167 12253066 ~ 12254974 (+) True G37714
XR_005639029.1 other downstream 851861 12274760 ~ 12278624 (+) True LOC120557851
TU50647 other downstream 963272 12386171 ~ 12387175 (+) True G37730
TU50865 other downstream 1293261 12716160 ~ 12719472 (+) False cdab

Expression Profile