RNA id: TU50620



Basic Information


Item Value
RNA id TU50620
length 246
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G37718
representative True

Chromosome Information


Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 12300250 ~ 12300495 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


GGATAAGCTGTCAGAGAGAAGGGCAGAGGTGTGAGGAGTCACTGGGGAAGAAGAAACATGTTGGAGAGGAAGACGTTAGCTGTCGCAGAAACATAAGGAGGCCCTTCAAAACATGAAGCgctgagaggagaagaggacCTTCTGGAGCAAAGCACTTGTGTGGAAGTCAGGATAAGATTTGAGGGAATTAAAGACACAAGGCAGAAGAGGTGTCTGCTGGAGGTATGGGGTGCATTCACAGCACGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_005638918.1 lncRNA upstream 134605 12152765 ~ 12165645 (+) True LOC120556983
TU50577 lncRNA upstream 189462 12109304 ~ 12110788 (+) True G37691
XR_005638970.1 lncRNA upstream 275513 12024330 ~ 12024737 (+) True LOC120557465
TU50441 lncRNA upstream 437280 11861473 ~ 11862970 (+) True G37606
TU50427 lncRNA upstream 442553 11775341 ~ 11857697 (+) True G37595
TU50642 lncRNA downstream 82961 12383456 ~ 12383735 (+) True G37725
TU50645 lncRNA downstream 84496 12384991 ~ 12385216 (+) True G37728
TU50646 lncRNA downstream 84895 12385390 ~ 12385646 (+) True G37729
TU50675 lncRNA downstream 149557 12450052 ~ 12450548 (+) True G37742
TU50696 lncRNA downstream 284162 12584657 ~ 12585811 (+) True G37761
XM_039798482.1 mRNA upstream 3215 12283121 ~ 12297035 (+) True eif4ba
XM_039798489.1 mRNA upstream 3215 12283121 ~ 12297035 (+) False eif4ba
XM_039798490.1 mRNA upstream 3215 12283121 ~ 12297035 (+) False eif4ba
XM_039798491.1 mRNA upstream 3215 12283121 ~ 12297035 (+) False eif4ba
XM_039798483.1 mRNA upstream 3215 12283121 ~ 12297035 (+) False eif4ba
XM_039798498.1 mRNA downstream 6866 12307361 ~ 12331774 (+) True LOC120557853
XM_039798499.1 mRNA downstream 6866 12307361 ~ 12331774 (+) False LOC120557853
XM_039798497.1 mRNA downstream 10860 12311355 ~ 12331774 (+) False LOC120557853
XM_039798492.1 mRNA downstream 11554 12312049 ~ 12331774 (+) False LOC120557853
XM_039798494.1 mRNA downstream 11554 12312049 ~ 12331774 (+) False LOC120557853
XR_005639029.1 other upstream 21626 12274760 ~ 12278624 (+) True LOC120557851
TU50615 other upstream 45276 12253066 ~ 12254974 (+) True G37714
TU50430 other upstream 494856 11780178 ~ 11805394 (+) True G37597
TU50377 other upstream 905916 11390739 ~ 11394334 (+) False LOC120557336
TU50347 other upstream 947863 11352078 ~ 11352387 (+) True G37525
TU50647 other downstream 85676 12386171 ~ 12387175 (+) True G37730
TU50865 other downstream 415665 12716160 ~ 12719472 (+) False cdab
XR_005638946.1 other downstream 435372 12735867 ~ 12741048 (+) False b3galt6
TU50929 other downstream 525034 12825529 ~ 12857413 (+) False kif21b
XR_005639082.1 other downstream 891283 13191778 ~ 13191911 (+) True LOC120558254

Expression Profile