RNA id: XM_039798497.1


Basic Information

Item Value
RNA id XM_039798497.1
length 5764
RNA type mRNA
GC content 0.48
exon number 25
gene id LOC120557853
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 12307361 ~ 12331774 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGTCACCACGGCGATAGCCAAAAACAACTCTTGGTGGCTGCAGGAGAAGCAGGCGCCGAGAGTGGACATCGTCACACGGGACGATGATCAATCTGGATAGGAGAAGTCTAAGCGGGTGACTCCCACCTGTACCTCAACATCAGACCTGCACGGCTCCACAAAATCTACACCACAGAAGAAGAGAGGCTCTATACTGAGGAGTAAAAGTGTGGAACAAGTGATGGAGCATGTGATGGAGCGTCACTATGACTTTGACCTCACCTACATCACGGAGAGGATCATCTCTGTCTTCTTCCCGCTGGACCTGGAGGAGCAGCGGTACCGCAGAAACCTACAGGAAGTGGCCTCCATGCTGAAATCCAAACACCAAGACAAGTTCTTGTTACTGAATTTATCAGAGAAGAGACATGACATCACCAGACTTAACCCAAAGGTGCAGGACTACGGCTGGCCTGATGTTCACGCCCCCCCTTTGGACAGGATTTGTGCTGTTTGTAAAGCCATGGAGACCtggctgacctctgacccccacAATGTGGTGGTCCTCCACTGCAAGGGACACAAAGGGAAGACGGGGGTCATTGTGGCAGCCTACATGCACTACAGCAAGATATCAGCTGGAGCGGACCAGGCTCTCACCACTCTAGCTATGAGAAAGTTCTGTGAAGACAAAGTCTCCTCTTCCCTACAGCCCTCTCAGAACAGGTACATTTACTACTTTGGTGGGTTGCTGTCAGGTACCATCAAAATGAACAGCAGTCCTCTGTTCCTCCACCAGATCCTCATTCCATCACTACCAAACTTCCAGGCGGGAGGAGGTTTCTATCCATTCCTAAAAATCTACCAATCTCTACAGCTTGTGTACACTTCAGGCCTCTAtgatCCCCAGAGCTCAAGGGCAAGGAAGCTGTGTGTGACTATGGAGCCAGCGCTATTATTAAAGGGGGATATTATGGTGAAGTGCTACCACCGGCGGTGTCGAGCAGCAGAGAGGGAGGTGGTGTTCAGAGTCCAGTTCCACACCTGCACTGTCCACGGAGCCCAGCTATGGTTTGGCAAGACTGAACTGGACTTGGCCTGCACGGATGACAGGTTCCCTCCAGATGCTACAGTCGAGTTTATCTTCTCCAATGGGCCAGAAAAAATGAAAGGTCGTGAATACCGCAAGAATGATGCCTCCATCAAAGTGGACTACAACACCTCAGACCCTGTGGTCAGATGGGATTCTTATGAGAACTTTAACCTGCACCACCAAGACAGCATTGAAAATATCTGTCATACGAGGGGCCCTCTGGACGGCAGCCTCTACGCCCAGGTGAGGAAGCGCCGTGGGCCGGGCTCGACTGCCTCAGCAGCGTCGCCCAACGGATGCCTCACTAGCAGCCCAACAGTCAAGCCTCAAACTCCCAGCCAGCCCCAGTCTCTCACCTACACATCTGACTCTAGCCGCTCCTCAGTCCCGTCCGATCACCTGGAAGACGCCTCTCCGTCCATAAaccgcccagaaaaagaaaacactgactgTCCAGTGATGCGAGGAGACGGGGAAGATGGAGCAAAGGAGAAAagaagagggaaagagaaggaTAGAGAGACAGCGATTTTGGATGACGGAGATACGCAAAGTCCTGGGGGTTTGAGGCAAGAGCACTCGTGTTGCGGTCGAGCAGGCGCAAAGTGTGGCGATGGCGGATGGGAGAGGGAACGAGAGCCCTGCATCTCTGACGGCCATTGTCTTGGCCGTTGCAACAGCATTAAAAAGAATCCAAAAAGCCAAACTCTGCCGGCCTTACCATGCAAATCCGTGTCCCCGCCTCCTCATTCAACTCATATGGAACTCTGCCATCGACATAGCGCCCATCCTTTACCTGAGTTACCATGGGAACGTCCAGCCCCGCCCCTACCCTGTCTCCTCAGGCCTTGCTACCCTTATTCCACCGCTGAACACAACCACCCACACAGCCACACCCTCCCAGCCTTAAACAGACTCTGCACTGGGGAAGAGTGTCACCTCCTCCATTATTCCAGCCACAATCCAGCCTCTCATCTCTCCCATCAATCACTGCCCTCGAGCCCTTACAGGGAAATGTTCTTCAGCTCTCCAACACCGTCCTCTGGTTGCCACTGTCGGGACTGCTCCAGCAGGCGAGAGCACCAATCAGCCTCAGTTAGAGCATTCCACCCATTGCACCCCGACCAATCAGAAAATCCACACTGGTCCCAAAGAGCAGGGGTACAACGAACAAGAGAGGCGCCTCCACTATGGGAAAGTGAAAATCCATGGGAGGTGGCGAGAGAGGCAGAGTTCTGGCAGTGCAAATCCGCCATGCCGGcatttcgtgttgtccaccctTTGGATCAGAGTCCAAACTTGGAGCCTAGATATGCTATTGGACCTCATCAGGGCTACCCCAGCCCCCAGTCTCTAATGGATGTGCGGGATGGAGCCAGCAGTGGTTACCACACCCCTCCACAGCCCCGTCACTCCTGTCCCTGCTCTCCTTATCAATCGTCCCCAGCCGAGAGCCATGAGAGCCGGGGTTACGCCTCAGGGTACCACTCTGGATCAGCCTCGCCTCTGCCTGCTAGTAGCCCCTCTCCTGGGAGAGGCAGGCTGCCCGAGACTCCCTCTGGATCTCGAGACCAGCAGCACGCTCAGCATCACAAAGAAGAGGCCAAGGCTGATTTGGAGGATGACAAATCCCAGGGTTCAGAGGGTAAATCAGACTCTAATGGACAGTCAAGTACCCCTGGGCTGGACTCTGATCCTGACTACACAATCATTGGAAGCAgcagccccacacacacagaagacagTCTAACTGCTGATAGTCCTTCTCAAAGCCAAGAAACCTCTACACATCTGGAGTCCAGCTCAAATAGCAGCAAAGCCATCACACCAGTACCAAGAGAAGCACAAACCCAAAGTTCCAACATATCCATAAACTCCACACAACCATCAAGCGAGCAGAGTTCGAGCTCCGATGGTACGCTCGGAGCAGCCAAGATCACAGGAAGTGCAGAGGGATCTAACCAATTACAGACTTCAAGCTATGCCACTGTCATCATCACTCCAGTCCAAGTGCAACTGAATGGCTCTGCCCTTCCTAGTGATACCAcatctgacagcagcagaggtgtATCCATGAACCCTTCTGTCAGTCTTAGTTCTAGCCCTTCCACCACTTCCCCAAATTCTCCTATTGGCTCCCCAGACCTTCAGTCTTCTCCTCAGCGCTCTACATCAGCTACAGACATAGCGGGACAAAGACTGAGTCCGGAAAGAGACAGCTCAGCCGACACCAAACCGCCATCACCTGTGCCCGAAGGATATCATACACCAACCTTCCCCTTAGCGTCTTATTACTACCCATTACTAAACGTCCCTCACATACCGTACACTGGGTACACTGCAGTCACCATCCCCGCCATCCAGCCACCGCTTCCCGAGAAGAAACGGCTTTCGTCCACACCAGGATCCTTAAACGGACACAACTCTCTACTCAGGGCCTCCTCAGCTCCTTCCCCTATGCACCACGTTACCTTCTCCACTTCTGTGGGAGAACAGAGATGGGGATCTTCACAACACAGCTGTAGGGAGGAGGCAGACATCAGGGTCAATGCTAAGTTTGTCCAGGACAGCTCCAAGTTCTGGTACAAGCCAGGCATCTCCAGAGACCAAGCCATAGCTGTTTTGAAGGACAAGCAACCAGGAACTTTCCTCATCAGAGACAGTAACTCATTCCAGGGGGCCTACGGCCTGGCCCTCAAGGTGGCCACTCCTCCTGCTAATGCCAACGTCACTGGCAGTAAAGGGGACCCTCTGGAACAGCTGGTTAGACACTTCCTCGTCGAGACAGGGCCACGGGGAGTGAAGATCAAGGGCTGTCAGAACGAGTCCTACTTCGGAAGTTTATCTGCCCTGGTGTACCAGCATTCAATCACTCCCATCTCTCTGCCATGTGCCCTTCGCATCCCAGAAAAAGATCTGGTTGGGGAGCTTCAGGAGATGCAGAGTGCAACAAACACCAGCACAGCAGCTAACCTCCTCAAACAAGGAGCAGCTTGCAACGTGCTGTACCTGAACTCTGTGGAAACCGAGTCGTTGACGGGCCCTGAGGCAATCTCAAAGGCAACCAAGTGTACTTTGGCCCTGAGTCCACGTCCAGTGGCAACAGTGGTCCACTTCAAAGTGTCTGCTCAGGGCATCACTCTAACCGACAGCAAAAGAAGGTTATTTTTCAGGAGACACTACCCAATCAACAGTGTGACTTTCAGCAGTCTCAACCCCCAAGACCAGAGGTGGACTAATTCTGATAGCACGTCAAGCAAGATGTTTGGCTTTGTTGCGAGGAGGACAGGCAGCGCTACAGAGAACGTGTGTCACCTGTTTGCAGAGATGGACCCCGAGCAGCCAGCTGTGGCCATTGTCAACTTTATCAACAAAGTCATGCTGGGACCACAACTACGCAGATGAGAGAGGGGATCTGGGGGAGATGTTAATATGAATTttaatgaagtgtgtgtgtgactacatTTGTACTTGCATTTGTACAGGTGGCATGACTGTGCTCGACTGTGGCTGTTTTTATAACATAATCCAGTTCTGACAGATCACTGCTCTGTAGGGCaaagtattttttacatgtCAGTTTACAAAGCACACCGTGCATAACCTTGAGAGGAAAAGTTTGATAAGCCAAAGACTGACCTAACTTTGGTAACCTTTGCCAAATGAGATTGAAATGagagttttggtctttttttttgtttttgttttttgctgttgataaagttatttaatttgtaatccTGTTtcaaacagttcaaatgttgtATAACAAAGTACCACATTGCTATTTGTATTAAAGTTAGAGCTAAAGGAAATATAGCTAAGAAGTCTTTAACAAGTAGTAAAATGTAAGAGTCATCTTTAATGTGTAACGTGACCAGATGAAATTGTGGTCATTAGAAATGTTAGAAAGAGTAAATGAAGTAATTCAATATGGAAGAGATCATGTATTTGGATTATCGGGAAGAAATCGTCTTTGGCTACATTTTAACTACTACATACATTTGTAACAATCAACTTTGTTCTTGATGCAACTATAGTGTATTTTTGTTGAAGTGATAACAACAGATGTAGTAGTGTATTATGCTAAACCTGCCTCCAaattaaaacacagacagatagatgatttaacaaaatgttatgtGGATACTAACTACATAAGCAAGTAAAAGGGGGGTCAGCCTTAAAACAGAGTtaacaaatgtaatttaaaagatTGTGGACAGGACCTAAATATTTTCAACATTTCTACAGCTAAATAAGAAAAAGCCTTACTTTGTTAAgttaaaaatgtgatggaacCAAAGGACATTCTCATATGACAATCTCTGCAATTTTAGTGATGACATTATAAAAAGAGCCAGTAGGCCCTATAGAAAAGTCTCTCCATATCACAGATTAGTCTTGGCCTGTCTATGTCCTTATTTAAGTAACCAATATTCATGGCAACAGATACTCCAAAGACTTCATTATTGTGTAAAGATATTTTGaatgtttgatttttttatctatacgcttttgttttttgtgtgttttctataAATTGATACCGTTTTTAGATGACTTCagcacaattattatttttcataatggaTTTTTATGTAAAAGAAGTAATATATTTTAGGCCCATATGAAGAATGGTATATCTGTCATATTTGACAGGACATTTAagtaataaaattgaataaaatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50620 lncRNA upstream 10860 12300250 ~ 12300495 (+) True G37718
XR_005638918.1 lncRNA upstream 145710 12152765 ~ 12165645 (+) True LOC120556983
TU50577 lncRNA upstream 200567 12109304 ~ 12110788 (+) True G37691
XR_005638970.1 lncRNA upstream 286618 12024330 ~ 12024737 (+) True LOC120557465
TU50441 lncRNA upstream 448385 11861473 ~ 11862970 (+) True G37606
TU50642 lncRNA downstream 51682 12383456 ~ 12383735 (+) True G37725
TU50645 lncRNA downstream 53217 12384991 ~ 12385216 (+) True G37728
TU50646 lncRNA downstream 53616 12385390 ~ 12385646 (+) True G37729
TU50675 lncRNA downstream 118278 12450052 ~ 12450548 (+) True G37742
TU50696 lncRNA downstream 252883 12584657 ~ 12585811 (+) True G37761
XM_039798490.1 mRNA upstream 14320 12283121 ~ 12297035 (+) False eif4ba
XM_039798500.1 mRNA downstream 7781 12339555 ~ 12370646 (+) True LOC120557854
XM_039798010.1 mRNA downstream 62811 12394585 ~ 12436726 (+) False LOC120557555
XM_039798006.1 mRNA downstream 62815 12394589 ~ 12439375 (+) False LOC120557555
XM_039798009.1 mRNA downstream 69132 12400906 ~ 12439375 (+) True LOC120557555
XM_039798007.1 mRNA downstream 69132 12400906 ~ 12439375 (+) False LOC120557555
XR_005639029.1 other upstream 32731 12274760 ~ 12278624 (+) True LOC120557851
TU50615 other upstream 56381 12253066 ~ 12254974 (+) True G37714
TU50430 other upstream 505961 11780178 ~ 11805394 (+) True G37597
TU50377 other upstream 917021 11390739 ~ 11394334 (+) False LOC120557336
TU50347 other upstream 958968 11352078 ~ 11352387 (+) True G37525
TU50647 other downstream 54397 12386171 ~ 12387175 (+) True G37730
TU50865 other downstream 384386 12716160 ~ 12719472 (+) False cdab
XR_005638946.1 other downstream 404093 12735867 ~ 12741048 (+) False b3galt6
TU50929 other downstream 493755 12825529 ~ 12857413 (+) False kif21b
XR_005639082.1 other downstream 860004 13191778 ~ 13191911 (+) True LOC120558254

Expression Profile