LOC120557854 (LOC103386109,LOC100136371,LOC104937510,LOC102227505,LOC103464934)


Basic Information

Item Value
gene id LOC120557854
gene name LOC103386109,LOC100136371,LOC104937510,LOC102227505,LOC103464934
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 12339555 ~ 12370646 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039798500.1
CATAACAAAAAGTAAAGACCATCTATTTGGGTCCTGAAGAAGGAGGGGTATTTCACGTCGGACTATTGAGTTTTCTTCATGTTCGTGTGTACGTTTGCCCGTCAGTGAAATACAGTTGCGTCTCAGCCATTTTTTCGTTGGATGTTCGTTGGCCGCGGTCGCAGATCGGTTAATAAGCTGGCTGAACTTGGTGCCGCGTTTAAGGGTTAAAGCAACCAGCTAGCCacgttgctaacgttagctactacaAGCGCTGCTGTGTGAGCCAACGTCTGGAAGGGCGTACGAGTTTGACGTTTTCTCCCCAAGTCTCCTCACATTTTTGAGTTTAGTACAACGCGGTCCTCTCTCCTCAAAGCTAACCCACCCAGTCAACATGGAGGGGACACACTTTGCAAGAGCATGAACACGACGACAAACGGCGACTAAAGAGGATTAAAAGCAACTCGGTCTTGATGGGGAAAAGTTGAGTTGAGGATTAACAACTTGGGATAAACTGAAGAACGGTTTCAAGTCTTACTATTGTATAAGGGCATGCAAAAACCTCAGTGATGGAGTCAACAGTTGTGAGTACGTCCACTCTGGCCCCTGATGAGTTTGATAGAAACGTGCCGCGGATCTGCGGCGTGTGTGGTGACAAAGCCACCGGCTTCCACTTCAATGCCATGACCTGTGAAGGTTGCAAAGGTTTTTTCAGGCGCAGTATGAAGCGCAAGGCCGCCTTCACATGTCCCTTTAACGGCAGTTGCACCATCACCAAGGACAACAGGCGCCACTGCCAGGCATGCCGACTCAAACGCTGTGTGGACATTGGCATGATGAAAGAGTTCATTCTGACAGATGAGGAAGTGCAGAGGAAGAAGGACCTGATTCAAAGGAGGAAGGATGAGGAAGCACAGCGTGAAGCGGAGAAGGAGGCGCGACGGCCCCGGCTCAGTGACGAACAGAGTCAGGTCATCGCCACGCTGGTGGAAGCGCACCACAAAACATATGACGACTCCTACTCTGACTTCTGCCGCTTCAGGCCTCCTGTTCGCGAGGGCCCAGTGACGCGTAGCGCCAGTAGAGCGGCCTCTCTCCACTCTCTGTCTGATGCCTCCTCTGACTCCTTCAGTCACTCTCCAGAGTCGGTCGACACAAAAATGAACTTCAACAACCTGCTGATGATGTACCATGAGCAGGGCAACAGCCCTGACTCCAGCGAGGAGGAGGGCTCCAGCTTCTCCATGCTGCCCCACCTGGCTGACCTGGTCTCCTATAGCATCCAGAAAGTCATTGGCTTTGCCAAGATGATCCCTGGGTTCAGGGAGCTGACGGCAGAGGACCAGATTGCCCTGCTTAAGTCCAGCGCCATTGAGGTGATCATGCTGCGCTCAAATCAGAGCTTCAACCTGGAAGACATGTCCTGGAGCTGTGGTGGGCCTGACTTTAAATACCAGATCAGTGATGTCACCAAAGCGGGCCACACTCTGGAGCTGTTGGAGCCACTGGTGAAGTTCCAGGTGGGCTTGAAGAAGCTCAACCTGCAGGAGGAGGAACATGTGCTGCTGATGGCCATCTGCTTGCTTTCTCCAGACCGCCCAGGTGTGCAGGATCATGCACGGATCGAAGCCCTCCAAGACCGTCTGTCAGAGACCCTGCAGGCCTACATCCAGCTTCGCCACCCAGGGGGACAGCTGCTTTATGCCAAGATGATCCAGAAGCTGGCCGACCTGCGCAGCCTCAACGAGGAGCACTCCAAACAGTACCGCTCGCTCTCCTTCCAGCCGGAGCACAGCATGCAGCTCACTCCGCTCGTGTTGGAGGTGTTTGGCAGCGAGGTCTCCTAGAACCTCTGAACCACCTCAGTGAGGCAAAATGGAGGGAGGGAGTTGAGGATGCGCTGGATGGGACTaaatggaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgatggagagCAAGCAGATGTTAAGAGACTAAACAAGGAAACTTCATATAATACAAATCAACTATACATACAACTTCTGCTTATATACAGTGTTTTTGTCTATTTAAATCAACAAGCAGCTGCTTTAAATGCCtggacattttgtgtgtgtacgtgacgtgcacacaccaacacaacaaGCATACTCAGTTATTCATTTAGCCATTCAGTTGAGCTACCTCTTTGTTTTACTGGGGTTGTTTTACATCACCTATGTAAAACAGTAACCTTTACACGGACAATTTAGATACAGTCTACTATACTATACTGACAGTTCAGTATTTTTCAGTGCAAAAGCAGTGCCTGCACATTACTTTGACTTTTTGATGTTtcaaaatttcatattttttttttttcatctgcttCTCTCCAAGGCAGCGTCTATATGACTGTGTATACCATTCAAAACACATACCTTTCACCAAAGGTATGGTCAACTACTTTCTCAAAAAGCTTCCAGTACCTAAAAATAGCCTTGCTGCTTGATGGCTCGTTTCACGCATGCAGCCACTCGACATGCTAGCAAGTTGTCTGACTAGCCTCACAGCCTATGaaaactaaactgtcattatttaggTTTATACTGCAGAGTACAGAACGGTCTGTAATATAGTGAGGTTTTGATAGGACTTTGGGGTGCCTGGTTTTGAGATGAGAATTAGCCACTAAATGTGTTAGCTACTTTTACACTGCTAACTGTCAATCAAACCAAGCCGGCATTATGGCTTGTTACGctcttaaaaatgtttttcattattCTTCtcgttttgtttgtttccatgTAAATAGTTAATTACTACCACATGTATCCTACGCACTGTTTTACCACATTTTACTCAAGCCTATGTattgatatacagtatctatattATCACAGATTTTAAAGGGCTAAAATGCCAAATCTAACTGGATAGTAAATCGAGGCCAAAGCAAGGGGCCTGTCTTGTTAATATATAGCTGCATACCATACTTGGAATTGGCATATATACTGATGTAATTGCAAtggatgttttttctttttttttgtacgtCATTTcaccttttaaaaacaattccATGAATTGTTCCTCCTTAGTAAACAGTGGCTCGGTGGGCAGAGAGCTTAGGAAGCTGCTTCAGACCTCCCCAGATATCACACCCCTTTCGTTTCTGACAGGGAAGTGGATTTTCTAGAATGTCGGAGGGCCTGGGCTGTGCTGATGGTGCGCACCTCTACACTCAGGCCCTCCTGTTTGATGATGTATGCTGCGCAGCCCTCTAGTGGCTGCATTGTGTAAATACCaggtatataaatatataaaagatgTCTGCCGCTGTACATAGGGCTACATAAATAATTCTCAAGGCTAATTCTTTCAGAAATATATATGCAAATATAATAttgaccctttttttcttttttgattcATTATCACTACTTTCTGAGACACTATGCTCTTTTGTTTTGACTTTGATCAAGTTTTTTTGTAAGAATGAGTTAGAAATGGCTTAAACAGGGATTGCTTTGTGTATTTGACTcagtcaaattattttttttagtggtgggTTGATGTATTTGCCTAATTTCCAAGGTTCATTTTCAGAAAGAGGACAGGCTCTCTAATATAAGCCATATAGATCACTAAGCTAGTTATACACCTGATACATTGTATCGAAATTATGACTCCAGAGCCTTGGATATCCTCACAATATAATCTTTAAAATTCATATGCTATTTATCCATGGCTCTTGGAAGATAAGCTTGTATATGATAGGAGCTCATATGCCTTCTCTCTGCTGTCATCTTGGGCTTATGCTTCATCAGACAGCATCTAATGGCTTATAAACCAAACTGCCAAGAGAATTTAAAATGCTTAGGTTTAGAGGCCAGTAATGTTTAGCTTGCTGCATGTGGGGTTATGGTAACATTTTATGAGATGCGTGTtttattatatcaacataatTCCCCAAAGAAGTGTTAAGTCAAATTCTTGCCAAGTTCAAATGATTTCACTAAAGCGTCTCTCATATATGACATGAGTCTCAAACACATCGTTTTTGGTCTTCTATTTGCTGTGTGACAGAAGACGTTGATTAAAACGGTTCCTGTGATTGGCCTGTACAGGCCTCCTATGTCACACCGAGAGCAGACCAGGGTTACTCTGTGATCTTAGAGGAAGATGGTGGGAGAGCGAGCACGTGTTTGTCTGGACGAGTTCTCACGACTGCTTTGTGTGAGATTGTGGCAGTTGTTGCTTTAATTTGTTCAGACCGCATGGCTTAGGATGTTTAGTCCATTCTCCGTCAACGTGGTTTTATTCCAACTCTCCATCAGTCACTGTGACAACTAGCTGACAGTCGGGGCTGCACACAGAGATGATCTGCATAGCAGAGATAGTTAAATAGTTTTTGGATGTAATCATTGGTTTTCTTCTTGAAAATCATTGGGattatgttgtgtatatatatacacaacattattatgttgtgtgtgtgt

Function

NR:

description
PREDICTED: vitamin D3 receptor B

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0070561 vitamin D receptor signaling pathway biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08539 VDR, NR1I1; vitamin D3 receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039798500.1 True 4568 mRNA 0.45 10 12339555 12370646

Neighbor

gene id symbol gene type direction distance location
LOC120557853 LOC103354987 coding upstream 7781 12307361 ~ 12331774 (+)
eif4ba eif4b coding upstream 42520 12281677 ~ 12297035 (+)
tgm2b tgm2,LOC103354993 coding upstream 211845 12114008 ~ 12127710 (+)
LOC120557971 kiaa1755 coding upstream 227714 12081105 ~ 12111841 (+)
myl9b LOC100697131,LOC101062217,LOC105901900,LOC103386121,LOC106565219 coding upstream 433801 11893590 ~ 11905754 (+)
LOC120557555 NA coding downstream 23939 12394585 ~ 12439375 (+)
phf13 phf13 coding downstream 118051 12488697 ~ 12496235 (+)
LOC120557182 camta1 coding downstream 137367 12508013 ~ 12560180 (+)
hipk1b LOC103354978 coding downstream 191183 12561829 ~ 12582404 (+)
pusl1 pusl1,LOC102782008 coding downstream 289867 12660513 ~ 12674959 (+)
G37718 NA non-coding upstream 39060 12300250 ~ 12300495 (+)
LOC120556983 NA non-coding upstream 173910 12152765 ~ 12165645 (+)
G37691 NA non-coding upstream 228767 12109304 ~ 12110788 (+)
LOC120557465 NA non-coding upstream 314818 12024330 ~ 12024737 (+)
G37606 NA non-coding upstream 476585 11861473 ~ 11862970 (+)
G37725 NA non-coding downstream 12810 12383456 ~ 12383735 (+)
G37728 NA non-coding downstream 14345 12384991 ~ 12385216 (+)
G37729 NA non-coding downstream 14744 12385390 ~ 12385646 (+)
G37742 NA non-coding downstream 79406 12450052 ~ 12450548 (+)
G37761 NA non-coding downstream 214011 12584657 ~ 12585811 (+)
LOC120557851 krt18,LOC105931717,LOC101469154 other upstream 60931 12274760 ~ 12278624 (+)
G37714 NA other upstream 84581 12253066 ~ 12254974 (+)
G37597 NA other upstream 534161 11780178 ~ 11805394 (+)
LOC120557336 LOC103359259,LOC100704408,LOC101476502,LOC102796717,LOC102216118 other upstream 945157 11385184 ~ 11394398 (+)
G37525 evc2 other upstream 987168 11352078 ~ 11352387 (+)
G37730 NA other downstream 15525 12386171 ~ 12387175 (+)
cdab cda,LOC103354969,LOC106590862 other downstream 345514 12716160 ~ 12719493 (+)
b3galt6 b3galt6 other downstream 363880 12734526 ~ 12741048 (+)
tmem167b tmem167b other downstream 378562 12749208 ~ 12752285 (+)
kif21b kif21b other downstream 454870 12825516 ~ 12907935 (+)

Expression


Co-expression Network