RNA id: XM_039798488.1


Basic Information

Item Value
RNA id XM_039798488.1
length 2050
RNA type mRNA
GC content 0.58
exon number 15
gene id eif4ba
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 12281677 ~ 12297035 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTAAGCAAACCAAGGGAGGAGACAGGCCCGTGAACGGCGATGCGCGCTCCCGATAATAAACCTCTGACGCGTTCATCCGGGAACTACTACGAAGAACTCGTTCTCCAACATGGCGGCGTCAGCtaagaagaagaataagaagGGGAAGACCCTTACTCTGACTGACTTCCTGGCAGAGGACAAGGGAGGGAGCAATGCGCCCCCCAGCTACCCAGCCAAGTCCACTAGCTGGGCCGATGAGACTGATGAGCTGGAGGGAGATGTCTCGACCTCATGGCACACGGAGGAGGATTCATTCCGGGCACCACCCATTGACCGGTCCATCCTACCCACAGCACCTCGCTCAGCTCGTGAACCCAATGTCGACCGGTCCCGACTGCCCCGCAGCCCGCCTTACACGGCTTTCCTGGGCAACCTTCCCTATGATGTCACTGAGGACTCGATCAAAGACTTCTTCCGCGGCTTGGCAATCAGTGCAGTGCGTCTGCCTCGAGAGCCCAGTAACCCAGAGAGGCTAAAGGGCTTTGGCTATGCTGAATTTGATGATGTCGACTCCCTCCTGAGGGCCCTCAGTCTCAACGAGGAGAACCTGGGAAACCGAAGGATCCGTGTGGATATTGCAGACCAGTCTAATGATAAAGAAAGAGACAATGGTTCTATGGGAGGCCGAGACAGAGGTGGACGGATGTCAGACATGGGTCCTGACAAGACAGACAGTGACTGGAGGGCTCGGCCCAGTTCAGATGCCGACGATGGACCTCCCAAGAGAGAGGAGGCATTTGGAGAGAGATCACGGGACCGCTATGAGCCGGATCGTTTCAGAGATGGGCCACGGCGGGACAATGACCGCTATGATGGAGGAAGAGACCGCTTCCGGGATCGCTATGATGACAGGGATCGTAGAGACTTCGATAGAGGAGGTTTTGACTCCCGTGGTGGTGGGGGAAGTCGTCGTGCCTTTGGCAGTGGCTTCCGTCGTGACTATGATGACAGTCGAGGTAGCAGTGATCGTTATGGGGAACGGGATCGTTATGGCGACCGTGAGGACCGGTACGAGAGACGTACAGATGAGAGGCGTGAGGAGAGAGGTGAGACAGGTCCTCAGCAGAGACCTAAGTTGAACCTTAAGCCCCGTAGCGTGCCgaaggaggaggaaggcagCGGCGGTGGGGGTGGCGGCGGCGGTGGTGGTGGTACTTCCCCAGCTGCAGCTCCGAGCTCCGGAAGCAGGGCCTCATCCATCTTTGGTGCAGCCAAGCCGGTTGATACAGCAGCCAAGGAGAGGGAGGTGGAAGAGAGGctgaagaaagaggaagagaggctgCAGAGGCAGCTGGAGGAGGACAAAGGCCGGGGACCCGACAGAAAGATGCGAGACAGGGACCCGAGCTGGCGCAATGAAGAACCTCATACTGAGCGATCTCGCACAGGAAGCGAGTCTTCACAGCAAGGAAGTACTTCTGGAAGAGGCTCCCGGTGTCGAGATAGCGAGCGCTCTGGGGAGAATGAGGTTTTCAGTGGGAGAGAAGGTGAGCCCTCCTCCCCCGGGACCTCCCCGCAGCCCCCCCCTAGCAGCTCCTCCAAGGAGCCGTTGAAGGTGATGCCTGCACCTCCTCCAAAGGAGAACGTCTGGGCCAAGAGAAGTGCAGCCAGCACAGGCTCTAGCGAGGGTGATGGACGACCTCCAGTCTCTCCTGTTTCCCCAAGTGGTTCAGCTCCTCCCAAGCTCCGCTCCCCAAGTTCTGCAGATGAAAGAGGATCTGAAAAAGATGAGAACAAGGCTGACGGTGTGCGTCGGGACCGGGGGCCCCCACGGGCACGAGGGGTTCCAGCAGGGCCTGGAGCAGGGCGGGGCAGAGGAGAGGGGCCCAACAGAGACCGAAGGAAGGAGGCAGACAGAAAGGATAACAGAAGAGACCGAGACTCCAGACCACCCCCAGAGCCAAAGAAATTTGAAGAAACCCCAATCCCCAAGTTCAGCTCAGCCAGTAAGTATGCCGCTTTGCTAATGGACGGAGACGAAGGAGACGACGCAGAGGACATAGAATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638918.1 lncRNA upstream 116032 12152765 ~ 12165645 (+) True LOC120556983
TU50577 lncRNA upstream 170889 12109304 ~ 12110788 (+) True G37691
XR_005638970.1 lncRNA upstream 256940 12024330 ~ 12024737 (+) True LOC120557465
TU50441 lncRNA upstream 418707 11861473 ~ 11862970 (+) True G37606
TU50427 lncRNA upstream 423980 11775341 ~ 11857697 (+) True G37595
TU50620 lncRNA downstream 4101 12300250 ~ 12300495 (+) True G37718
TU50642 lncRNA downstream 87307 12383456 ~ 12383735 (+) True G37725
TU50645 lncRNA downstream 88842 12384991 ~ 12385216 (+) True G37728
TU50646 lncRNA downstream 89241 12385390 ~ 12385646 (+) True G37729
TU50675 lncRNA downstream 153903 12450052 ~ 12450548 (+) True G37742
XM_039798481.1 mRNA upstream 3053 12274761 ~ 12278624 (+) False LOC120557851
XM_039798915.1 mRNA upstream 153967 12114008 ~ 12127710 (+) True tgm2b
XM_039798726.1 mRNA upstream 169836 12081105 ~ 12111841 (+) True LOC120557971
XM_039797802.1 mRNA upstream 375923 11893590 ~ 11905754 (+) False myl9b
XM_039797801.1 mRNA upstream 375923 11900776 ~ 11905754 (+) True myl9b
XM_039798498.1 mRNA downstream 11212 12307361 ~ 12331774 (+) True LOC120557853
XM_039798499.1 mRNA downstream 11212 12307361 ~ 12331774 (+) False LOC120557853
XM_039798497.1 mRNA downstream 15206 12311355 ~ 12331774 (+) False LOC120557853
XM_039798492.1 mRNA downstream 15900 12312049 ~ 12331774 (+) False LOC120557853
XM_039798494.1 mRNA downstream 15900 12312049 ~ 12331774 (+) False LOC120557853
XR_005639029.1 other upstream 3053 12274760 ~ 12278624 (+) True LOC120557851
TU50615 other upstream 26703 12253066 ~ 12254974 (+) True G37714
TU50430 other upstream 476283 11780178 ~ 11805394 (+) True G37597
TU50377 other upstream 887343 11390739 ~ 11394334 (+) False LOC120557336
TU50347 other upstream 929290 11352078 ~ 11352387 (+) True G37525
TU50647 other downstream 90022 12386171 ~ 12387175 (+) True G37730
TU50865 other downstream 420011 12716160 ~ 12719472 (+) False cdab
XR_005638946.1 other downstream 439718 12735867 ~ 12741048 (+) False b3galt6
TU50929 other downstream 529380 12825529 ~ 12857413 (+) False kif21b
XR_005639082.1 other downstream 895629 13191778 ~ 13191911 (+) True LOC120558254

Expression Profile