RNA id: XM_039796939.1


Basic Information

Item Value
RNA id XM_039796939.1
length 3370
RNA type mRNA
GC content 0.41
exon number 12
gene id mapk14b
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 12754511 ~ 12776399 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CACAGTGACGAAGGGACGTACGCGTTCACGTTTCCGCGCGCCCAACAGCGAAGTGAGACATGAGCAAGACCAACACAGAACAGTGCGAAAAATTCAGCGAAAGCTAGTCCAGACAGAGCTTCCTCCTGACCCGAGCGCGTTTTGTGGAGGAAGTTGTCTCAAAGCGCCCCGACGTGCACGGAGAGGTGgtgatttttttgcacaatTGCACCGAATTTGCACGACTGGGCGGCTGAAGTTTGAGTGATTGAGGAccttctccgtttttggtttCGGGAGCAGCACGTCGTGCCACacggggaggagaggagagagggcagAAGTTTCCGCTGGCTTGTTTTGTCGCTGCGCGGCTGGTAAATCCGCAGGAATGTCGCAGAAGGAGAGACCCACTTTCTACAGACAGGAGCTCAACAAAACCGTGTGGGAGGTCCCGGAGCGGTACCAGAACTTGTCTCCCGTCGGCTCCGGTGCTTACGGATCCGTATGTTCGGTGTATGACGTGAAGACAGGCCTGAAGATAGCAGTTAAGAAGTTGTCCAGACCCTTCCAGTCCATCATCCACGCAAAGAGAACCTACAGAGAGCTGCGGCTGCTCAAACACATGAAGCACGAGAATGTGATTGGTCTATTAGATGTTTTCACACCAGCAACAAGCTTAGAGGAGTTCAATGATGTGTACTTGGTGACCCACCTAATGGGTGCAGACCTCAACAACATCGTTAAGTGTCAAAAGCTGACTGATGACCACGTCCAGTTCCTCATCTACCAGATTCTCAGAGGCTTAAAGTACATCCATTCTGCAGATATCATCCACAGAGACTTGAAGCCCAGTAATTTGGCTGTGAATGAAGACTGTGAGCTCAAGATCCTGGATTTTGGTTTGGCACGGCACACAGATGATGAGATGACGGGCTACGTAGCCACCCGGTGGTACCGAGCCCCAGAGATCATGCTCAACTGGATGCACTACAACATGACAGTGGATATCTGGTCGGTGGGCTGCATCATGGCTGAACTACTTACTGGACAGACGCTCTTCCCTGGCACAGACCACATTGATCAGTTGAAGCTTATTATGATGCTCGTCGGAACTCCAGGGCCCGAGCTCTTGATGAAAATCTCTTCGGAGTCTGCGAGGAACTACATTAACTCACTTCCCCACATGCCCAAGAGGAACTTTGCTGATGTGTTTATTGGTGCCAACCCTCTTGCGGTGGACTTGCTGGAGAAAATGCTGGTGCTGGACACAGACAAACGGATCACGGCATCTGAAGCTCTGGCCCACCCGTACTTTGCCCAGTACCACGATCCAGACGACGAGCCCGAAGCGGAGCCTTACGACCAGAGCTTTGAAAGCCGCGAGCTGGAAATTGAGGAATGGAAGAGGTTAACCTATGAGGAGGTAGTAAGTTTCGAGCCGCCGTCGTTTGATGGAGATGAGATGGAATCCTGAGGAGGAGGCATCTTTTCTTCCatctttttgttttccaaaaaacaCTCTTTAAGGACTATCAGTCTCTTGTGACTATCCACCActttctaaacacacacacacacacacacacacccatgacATTCAAGTGCCTGCCATCATTCATCTCCGGGCGACGTTGTTTAATCAGGGATAAGACTTGACATCCTGTTCCTTCTGTCCCCCACTTTGCTGTTTTTGTTACTCTGCATCCCAAGGCGCCAAGGTAGACTTTAAATTGTCCTTATATTTTTAGTGAGTTTCAAACTGCAGTGAGTCCTCCACACattaaaattaaatgttatttcaATCATCACATAAAACTGTTTAAATATGACAAACAGTATTTGTACATAAGTACTTCACTCAAACCAGTTACCGTATTTGTGTAATAGTCATTACTGGTGAGTCACGCCTCAGCCGACACCTTTGACAGTATGAATTTTCTTACTAGAGTTTAGCCTAAAATGACATATACAAAGATAGAGTATGTGATTTAATACAAGTATGTATAGGATAGgacagaatataaaatatttaccTCTACAAATTCAAGGCTTCATATTTCGTATTGTTGGATTTGAAGGCTTACAGTGTCCCTTTTTTGCAAGAGACTCAGCTTATGTATCCATTTCACCTGCTGAACATTAGTTTCTactattttctccatatcaatTATTCTTTTAGCACTTCCGTTCTGTTGTTTCAGAAGAATGTTACAGTCCCCATTATCACGATCTATACTTTTGCATGATAAAGCCAGATTTGGCTTATTTGTTTATTGAAATGTGATGTTTCCCACCATAACACCAACTGACAATGTACTTTAATCATTGCATTTATAAAAACACAGTTCTATTAATGTTTATTGAATGTTGGGGGCACCAGTCTGTCCTGTATTTATGATCTTTTGTTATGTTGTTTGTATATCAATGTAAAAGAGAATATTATTTGTCAGAATTTAaggttcttttttattatttatggaAAGCATACTGTATCAGAAACCAAATGTATCTTCAATAATCTCAAATGTCCGTTAAGCCGCAGTTACAGCTTGTGTGTCAGAGCcaacaatattattaaaatgttgCGGACAACCATATAGTTTTAATCAGTTTGATCAACTGCTTATTTCTGGAGTTGTTTCAGTTCcttttttctttagttttaaGCCATTCTCAAGCATTTCTTTATTATTTAGGTACTGCCCTTCGAAAGTATCCTAATTCTTTTaataaattcaacaaaaaacatctaagcaaaaatatttattacaaCTATGTCCACATTTTGTATTGACATACAAACCACTAAACAGTAATCTCCTAGTTCTGAAGTGTACtacaaacattgaaaaaatgttAGGAGTCAAATTACCTTGTGACATACAAGCTATAACCACGGTTCCTCTGGCTAATGTCAAATATCAGTGTCTTCACAATTTCATTTGCAACAGCTAGTTTTCATGTAGTGCTTTTtctaatgtattatttttttcttttggtgttAAATCAAGATTGGATGTTATTCTGTGATTCTTTTAATattgattgttgttttttgcgTAATGCTAGAACTGTACTTGTCATTCATTTGAATAATTTAGCAGGGCACATGTTTATGGAAAAGAGTGTAAGTTTACTCACTGGATGCTGAAGGCAATGCTGAAGCTTCATTCTTTGTAGTTTTAAAACAACTGCATACATTAGATAGGATATTTAAATTTTTCCATATCCAAATGTCAGTAGTTAATTTGGTTATTGGTTATGCTTTCTTTGCCTGAGATGTGTTCATATCTTTTTACTATGTGCTTTTATCACATGTACCAAGACAGCACGCCACCTGTAAATACCACCATTAGAAAATAAAGGCTACTATTTTTCAAACCTGTAA

Function

GO:

id name namespace
GO:0000165 MAPK cascade biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004707 MAP kinase activity molecular_function

KEGG:

id description
K04441 P38; p38 MAP kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50883 lncRNA upstream 2230 12749221 ~ 12752281 (+) False tmem167b
TU50860 lncRNA upstream 53832 12697225 ~ 12700679 (+) True G37882
TU50722 lncRNA upstream 71762 12681128 ~ 12682749 (+) True G37783
TU50715 lncRNA upstream 92526 12661771 ~ 12661985 (+) True G37778
TU50705 lncRNA upstream 147849 12603798 ~ 12606662 (+) True G37769
TU50970 lncRNA downstream 137671 12914070 ~ 12914413 (+) True G37966
TU50974 lncRNA downstream 286935 13063334 ~ 13064366 (+) True G37970
TU50982 lncRNA downstream 293772 13070171 ~ 13071870 (+) True G37978
TU50984 lncRNA downstream 295575 13071974 ~ 13072825 (+) True G37980
XR_005638901.1 lncRNA downstream 299020 13075419 ~ 13079887 (+) True LOC120556864
XM_039799078.1 mRNA upstream 2226 12749208 ~ 12752285 (+) True tmem167b
XM_039797394.1 mRNA upstream 15977 12734526 ~ 12738534 (+) False b3galt6
XM_039796936.1 mRNA downstream 472 12776871 ~ 12809790 (+) False srpk1b
XM_039796934.1 mRNA downstream 5761 12782160 ~ 12809790 (+) False srpk1b
XM_039796937.1 mRNA downstream 12949 12789348 ~ 12809790 (+) True srpk1b
XM_039796317.1 mRNA downstream 49117 12825516 ~ 12907935 (+) True kif21b
XM_039798418.1 mRNA downstream 149314 12925713 ~ 13060775 (+) True cpne5b
XR_005638946.1 other upstream 13463 12735867 ~ 12741048 (+) False b3galt6
TU50865 other upstream 35039 12716160 ~ 12719472 (+) False cdab
TU50647 other upstream 367336 12386171 ~ 12387175 (+) True G37730
XR_005639029.1 other upstream 475887 12274760 ~ 12278624 (+) True LOC120557851
TU50615 other upstream 499537 12253066 ~ 12254974 (+) True G37714
TU50929 other downstream 49130 12825529 ~ 12857413 (+) False kif21b
XR_005639082.1 other downstream 415379 13191778 ~ 13191911 (+) True LOC120558254
XR_005639080.1 other downstream 416848 13193247 ~ 13193320 (+) True LOC120558251
TU51031 other downstream 429085 13205484 ~ 13208258 (+) False spcs1
unassigned_transcript_200 other downstream 509840 13286239 ~ 13286311 (+) True trnar-acg_15

Expression Profile