RNA id: XM_039797926.1


Basic Information

Item Value
RNA id XM_039797926.1
length 5335
RNA type mRNA
GC content 0.49
exon number 17
gene id hipk1b
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 12561829 ~ 12582404 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAAGGACGTGGTTGTTCCGGTGAAAAGTGGATTTGCTGCTTAAAGATAGGCGGATTTAGAGTAGGATTGTTTATGTTTTAATCAACAACTGTACATATTTTTTAGGACTAGATGTTTTAACTTCATAATACAATGAAACCTACGTATTTTTCTTCTGTAAACTCGGCACTGTAACGCCTTCTCCTGCTGCCCAGCTCTGCATCGACTGAAGAAACAATGCAGGCCTAGCTAGcttctaacgttagctggcgGAAGCTAAAAGGATAACGCTGGTCCAGCAGACTGCAGTGGGATTTAAACCCTGGACGAAGCCGTTTTTCGACGCTGTAACGTTAATAACATCCAATCCGCTATGAGCTCTCAGCTGCAGgtcttctctcctccctccatctcctccaGTGCCTTTTGCCGCGTTAAGAAGCTGAAGGTGGAGAGCAATGTTTGGGACGTGTCCACCACTGAAGCTTATAGCTCCATAGCAGGCCAGTCGGCATACACCTTTACCCCGGCCATGGCTGTGGCACCCTTTGCACCATCCCTGGTCTTCCCGTCTGTAGCACCTGGCTCCAGAGGTCAAGTGGTGGTGCGGGCAGCTGATAGCACTGGAAGCCTCCCCCGTGGATCCAGCCGGCGTGTGGCAGAGCAGGCGACGTCTTCATCTTATGCTCATACGGAGACGTCCTCTGAAACAAGGGGGCACAGGCACGGGCAGAAAAGAAAGATTGAGGAGACCAATGAAAGCAGTGGGAGTGGATGTGGCAGTGTCCAAATATTGGAGGAGCTCTCAGCCCCTGCAGCAACTTACTCCACACGTAcgggtggtggtggaggaggcaCAGGCCAGTCCATACCCCACTCAGCTCCAACCACCAAGAGCAGCAGCTCCAATGGTGAAGGGGATTATCAGCTAGTGCAGCACGAGATCCTCTGCTCTGTGTCCTGCAGCTATGAAGTGCTGGAATTTTTAGGAAGAGGCACGTTTGGACAGGTGGCCAAGTGCTGGAAGAGGGGCACCAATGAGATTGTGGCCATCAAGATCCTAAAAAACCATCCTTCTTATGCTCGTCAGGGCCAAATCGAGGTGGGTATCCTGAACCGGCTGAGCGCAGAGAACGCGGATGAGTACAATTTTGTGCGTTCATACGAATGCTTCCAACACAAGGGTCACACCTGCCTGGTGTTTGAGATGCTGGAGCAGAACCTCTATGACTTTCTTAAGCACAGCAAGTTCAGCCCACTCCCCCTACGGCACATCAGACCCATCCTACAGCAGGTGGCTACAGCGCTGATGAAACTGAAAAGCCTTGGTCTGATTCATGCAGACCTGAAGCCAGAGAACATCATGCTGGTTGACCCTCTTAGACAGCCCTACAAGGTGAAGGTCATTGACTTTGGCTCAGCAAGTCATGTGTCCAAAGCTGTCTGCTCAACCTACTTACAGTCTCGCTACTACAGGGCTCCAGAGATCATTTTGGGTTTGCCATTCTGTGAGGCCATTGACATGTGGTCTTTAGGCTGTGTGATTGCGGAGTTGTTTCTGGGTTGGCCTCTCTACCCTGGAGCCTCGGAGTACGACCAGaTCCGTTACATTTCTCAGACTCAAGGCCTGCCTGCAGAGTACTTGCTGAGCGCCGGCACTAAAACCAGTCGCTTCTTCAATCGAGGACCTGACTCTAGCTACCCACTCTGGAGGCTAAAGACCCCAGCAGAGCATGAAATGGAGATGGGTATCAAGTCTAAGGAGGCCAGAAAGTATATCTTCAACTGTCTGGATGACATGATGCAGGTCAACCTGTCCTCTCATTTGGAGGGGACGGACATGCTGGCTGAGAAAGCTGATAGACGAGAGTTTATAGACCTCCTGAAGCGGATGCTCCGTCTGGATGCCGACAAAAGGATCACGCCTACAAAAACTCTAGGTCACCCCTTTGTCACAATGAGCCACCTCATGGATTATCCCCACAGCTCACATGTGAAGTCCTGCTTCCAGAACATGGAGATCTGTAAGCGTCGGACCTCCTATGATAGTGGCAAATCCCTCTACTCCACCAATGCGGTCCCCAGCGCTGCAGCGGGCAACCTCACTGTTACCTTCAGTAGCCAGCTCAACCAGCATAATCAGGTGCCTTCTGCGGGAGGAACGATGCCTTTGCTGAACTACCAGCCAGCTCTATACCAGCAGGCGACCATTAACATTCCCGGGCTTGCTCAACAGAGTGTCCCGATTCCAACGCGTCCTGCTGGGCTGTGTAGCCAGACAGAACCCTTCCAGCAAACTCTCATCGTCTGCCCACCTTCTACTATTCAAGGGCTACAGCCATCCAGTAAGAGTTCCAGTTTCCCTGTGAGGATGGAGAACTCTGTACCTATAGTACCTCAGAACCAGTCTGCTCAGTCATTGCAGATCCAGCCAAGTATGCTCACACAGCAGGCCTGGCCCACTGGCACCCAACAGATCCTCATACCATCGTCATGGCAGCAGGTCCCAGGTGTGGCCATTCACAGCTCTGCCCACCAGTCAAATGTAACTGAATCACCCCTGGAAACGCTTCATGCCAATGCTTCCACACAGCAGGGACACAGCTGGAGGAGCACAACTCAAGCCAGGACCCAGCAAGAGAGGAAGAAGGTGAAAGCCAGACGTGGAGAGAACAGAAACAGGGGTATATCCACTGCATCACTACTCGGCAGCAGCGGCGTGACCCCACCCAGCGCTACGTTGTCTCAGCCAATCGTCATCTCCGACACACCCAGCCCGGCGGTCAGCATCATCACTATTCATagtgacacagacacagaggatgAGCGCAAATTCCATCCCTCCAGCGTTGGTCTGAGCCAGCGCACTAACgtcatcagctgtgtgacgGTGCACGACTCGGACTCCTCTACAGCCAGCCCCCTGACTCCTCTGCCCCGCACACTTAACCCAGCTAGCACCATGTCATCACGCCAAGCCAAGTCTCTGGCAGTGGTGGCACCTTCAATTAAACCCCAGGGCTCTGAGAGAGGAGCCGTTTCACGTGGCCGCCTGGACACCGTGAACTACATGAAGCCTAAGAGATCATCCAACCGACAGCCCTGCAGCTCAGGGATGAGCATGGAGCGTCACGGACTGTTGCCAAGCCAGTCCCACCCCTTAAACCTCAGCCAGGTTCAGCCTGTGGTTTCTTCATCTCAGGAGCGTTCCCACAGTGACTCGTCTTTGCGTCGCCAGCCGACATTCCCTCCGGCCGTCTCCTCTCACTACAACTTCCCCGAGGTGTCAGCCCTGGCCTCGGCCTCGGCCCCTGGCCCCAGCCTGTACGCCTACCCGGCCTCCACCGCCCTCTCCTCAGCTTCTCAGGCCATGGAGCAGCTGCTAGGCCGTAGTCTCGCCAGCCACGGACACTCCCCCTCCGCCTATGCAGCAACGTACACCTCATCGTCGGCCTCCAGGAGAGACTCGGCCAGTCGTAAGGATTCTGTCAGTAGTCTGCTGCATGGCCTCCCCGCGGCCTACCAGCATCAGTTTGCCACTGGTTCTCCCTACATTAGCGTGACGCCCCGGGCCGAGGCTTACAGTGCCTACCAGCTAAGCCCCAGGCGCCTCACACAGTACCCGTACCTATAGGGAGTCTCGCGCACACTTTGAACAAAGAAAACGAAGAATCTACTTCCCCACATGCTATCACAAAGGAACATTTAAACTGTATTTCTAGTAGAACTGTTGGTCActtatttgtttgctgcttttgaCTCCAAAGCGACATATCACCCAAACTCATTTAATACTCTTTAGGgtcgtttttgtgtttttaaaaatgttctttgatatattgtgttttttttttttcctaaacaaTATTGTTTATAGCCTGTATTTTATCCCCATCTTGTCCAGATGTATAATTAAGGCATTGTGGTTAATGTATTTTAGTCCTGTTTATCTTGAGGTTTTGTGTGAAGAGAGATTATCCTCCTGTCACAAGTTGCAACGACACTTTAGGCGAGCTTTTGAGACGCCTGactcacaacttttttttttttttttttttttggcatttctgcttTATTGGATAGTGATAGCttggagagagacaggaaagggTGGGGGGATGATGGGCTGGAATTGAACCCGGACGGCTGCGGTAAGGACTCTGCTTTGATACAAGGCGTGCATGTTCTACCAGTTGAGCTACAGGGACGCCCGCTGGCTGAAAAAGTTACAAGTCATTAGTTACTCATGACCCTTGTTATGGAGTTTTCACACTAATCTAGCGATGCTCTGTGTTTCTTAGCTAACCTAATGACTGTATCTGTTTACTCACAAATGTCTTTTACcatgttttaaattatgttttgtcAGTGcgagaaaggaagaggaaggttcATGATGtctgttaagaaaaaagatgtGGTGAAAACTGATGGATACATGTTAATTTAAGTGCTCATGTGATAGTCTGTTATTGTAGTGACAGTGTTTAGGCAGGATTAATCATGTCCTTATGCAATagaaactcttttttttttaaactgcatcaACTGAGTGCTGAATGTATTTATGAAGTGAAGAAAGAGGAGTGGGATCACCATCTTAAAGAATGACGTGAAAAGCTTTTGTttgaaattgtttaaaaaaaaaaaaaaaaccttccctACTTTCCTCTccttgaaatataaaaatatccagtttcACATGGAGTGGAAAATATTCTATATCTGTGAATTCCAATTATGTAGGACCTGCTCATTTATTAAAATGGATTCATGGCCAGTTTTTACGGTTTTATATATGGAATTTTGTTTTCTCCTCATGACACTTTAGAAATGCTCGCTAGTAAGTTGTACGAACTACCCACACCGCCGTACAATGACTGATGAAATAAAATCATGCAATCTGCAGTAGGCCTTCTGCTCAGTTACACAATGTCTGATGAGAAGCTACTTTAACAGTCAAAGGTGGTGCTGTCCACTAAACATACTGTGCATTTCCCCTCAAAATGTGCAAAAGTGTCCACTTTGGCTTCAGTCTTGTCTGAATATGATATCCATTGTTTTTCACATATAGATTACTCCTCTGTCTGAACACGGCTGATTTGTGGCTTTTCCTGCCACCGTCTTGTAGAAGGAGGTGAATCTCAAGGGGGGGGGCTTCTGTGGGTTATGAAAGTTTTGTAGTAAATGCTTCCCCGTTGTGTTTGCATCAGTTTTGTGTTGTAATGTCTGAATATTTAACTATTTCATCTTAACATAGTATAGTTAAGAGGCTATTTGGTAGAACTAATTCAGGGAAAAGGTTTCAGCTCAAATAATCCACTGTCACTGTTTTCAATAAATAACCATAAATTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50675 lncRNA upstream 111281 12450052 ~ 12450548 (+) True G37742
TU50646 lncRNA upstream 176183 12385390 ~ 12385646 (+) True G37729
TU50645 lncRNA upstream 176613 12384991 ~ 12385216 (+) True G37728
TU50642 lncRNA upstream 178094 12383456 ~ 12383735 (+) True G37725
TU50620 lncRNA upstream 261334 12300250 ~ 12300495 (+) True G37718
TU50696 lncRNA downstream 2253 12584657 ~ 12585811 (+) True G37761
TU50703 lncRNA downstream 17036 12599440 ~ 12599671 (+) True G37768
TU50705 lncRNA downstream 21394 12603798 ~ 12606662 (+) True G37769
TU50715 lncRNA downstream 79367 12661771 ~ 12661985 (+) True G37778
TU50722 lncRNA downstream 98724 12681128 ~ 12682749 (+) True G37783
XM_039797279.1 mRNA upstream 1649 12508013 ~ 12560180 (+) True LOC120557182
XM_039797281.1 mRNA upstream 1649 12508013 ~ 12560180 (+) False LOC120557182
XM_039797276.1 mRNA upstream 1649 12508013 ~ 12560180 (+) False LOC120557182
XM_039797282.1 mRNA upstream 1649 12508013 ~ 12560180 (+) False LOC120557182
XM_039797275.1 mRNA upstream 6419 12508013 ~ 12555410 (+) False LOC120557182
XM_039796315.1 mRNA downstream 78109 12660513 ~ 12674959 (+) True pusl1
XM_039798509.1 mRNA downstream 129081 12711485 ~ 12715490 (+) True LOC120557860
XM_039797395.1 mRNA downstream 133774 12716178 ~ 12719493 (+) True cdab
XM_039797394.1 mRNA downstream 152122 12734526 ~ 12738534 (+) False b3galt6
XM_039797390.1 mRNA downstream 153464 12735868 ~ 12738534 (+) True b3galt6
TU50647 other upstream 174654 12386171 ~ 12387175 (+) True G37730
XR_005639029.1 other upstream 283205 12274760 ~ 12278624 (+) True LOC120557851
TU50615 other upstream 306855 12253066 ~ 12254974 (+) True G37714
TU50430 other upstream 756435 11780178 ~ 11805394 (+) True G37597
TU50377 other upstream 1167495 11390739 ~ 11394334 (+) False LOC120557336
TU50865 other downstream 133756 12716160 ~ 12719472 (+) False cdab
XR_005638946.1 other downstream 153463 12735867 ~ 12741048 (+) False b3galt6
TU50929 other downstream 243125 12825529 ~ 12857413 (+) False kif21b
XR_005639082.1 other downstream 609374 13191778 ~ 13191911 (+) True LOC120558254
XR_005639080.1 other downstream 610843 13193247 ~ 13193320 (+) True LOC120558251

Expression Profile