RNA id: XM_039797281.1


Basic Information

Item Value
RNA id XM_039797281.1
length 9165
RNA type mRNA
GC content 0.48
exon number 23
gene id LOC120557182
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 12508013 ~ 12560180 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tcccccaccaccacctccaccaccaCTAGGTCGagtcgaggaggaggaggaggaggaagaggaggaggaggagggatgagGCGCGCGGCGGAGGGGAAATGGCTGCCGAAAACAAGCCGGAAGGACTGAAGAAGATAAGAAATCCAGAGCGAATGGTCAGGATTGCCGTTGGTTACACAGGACACACCCCTCCCAAGAGTGATGACACTGACGCCAACAaTGAGCCAGGCCAGTTGAAGATCTACCTTCCTAAAAAGCTGCTAGAATGTCTACCCAAATGTTCCTCTCTGCCCAAGGAGCGCCATCGCTGGAACACCAACGAGGAGATTGCTGCATATCTCATCACTTTTGAGAAACATGATGAGTGGCTGACGACATCGCCAAAAACCAGGCCTCAAAATGGCTCTATGATCCTCTACAACCGTAAGAAGGTGAAGTACAGGAAGGATGGCTACTGCTGGAAGAAAAGGAAAGATGGGAAGACCACCAGAGAGGATCACATGAAGCTCAAAGTCCAGGGAGTAGAGtGTCTGTATGGCTGCTACGTCCACTCCTCCATCATCCCCACCTTCCATCGTAGATGttattggctgctgcagAACCCAGACATTGTGTTGGTGCACTACCTGAATGTACCGGCAGTGGACGATAGCGGGAAGCCATGCGGCCCGGTCCTCTGCTCCATCAACACAGACAGGAAGGAGTGGGCCAAGTGGAGCAAGGAGGAGCTCATTGGACAACTCAAACCCATGTGTGCTGGAAGCAGCCTGCATCAGAAATGTTCCAGTGTCAAGCAGCGCATCATCTCATCCAAGCAGGAGTCAGGGACAGCAGCAGGAGGTGGAGCTGCAACGGGTATGGGCGTAGTGGCAGGCCAGAGAGCTGAGGAAGCAGATGGCACAGAGGTCCAGAACAGCGATGTGTCAGAGGGCCAGACAGAGCCCAGTCCTGGAGGGGGCAGGAGCAGAACgggtggaggagagaggaggaatggcAGGATAACCAAGCCCTCCCTACTCCCACAGAGCAGCATGGAAGTGTCCTCCTCTACTTCCACCAACCAGGTGGAGGTCCCTGACACCACCCAGAGCTCCCCATTGTCAATCACAAGTGACATGGCTGATAGCCCTGCTCTCGCCATTGGGGCTGGCTTGTCACAGAGTACAGCTGTGTTCATGTCTGAGGTCACCACGCTGACTGGGGATTCGGTTTACTCTGCTGGCCACACCCACCTGCTGGCATCCACCCATGAGAGCACCACCGCTGGCATCCTGTTGGCTGTTGCCCCTGAAAACCAGAGGTTTGCGTCATTTCCTGGTGGCATGGGCttaggggagggaggagagttGGTTCTATCCAGCTCTCTAGACTCTGGTGGAGGAGTCAGCCTTCCTGAGACCACCATGACTTTTGACCCTGATTGCTTCCTCAACAATCCCAAGCAGGGCCAGACgtatggaggaggtggagggaaGGCTGAGGGATGTAACGGTGATGATGGGGGACTCAACTGTTCCTCTAACAACTTTGTCTACAACCCAGCTCTTGTCAACAACATCAAGACAGAACCTACACCCCTGGAGCCGCCGCTGGCTGCTCAGAGCAGCTATGTAGGAGAAGGGACAGGCCTCAGCCCCAGCACCACCCTGGAGCAGATGGACTTCAgtgctgtgatgtcatcagccTGTGTCCCGAGTCTGACCCAGCCTACGCACCACCCCTCCCCTGGCCTCTTCCTTCAGGCTTCCCCCCAGACAAGCCAGCCCTCCCAGCTGCAGACCAATGGTACTGAGGCAACCCAGGAATCAGGCGAGGCCCAGGCTTACATAGGCCTGCCCACGGTGCCAACAGACACTCCAGTCACCAATGGAGACCCGCATACACACCTCCACCAAACCAGCCCGGACCAGCAGGGCCTTTGTGGAAGGAACGGACAAGGAGCGGCGGTGGGCTCTTTTCCTCTAACACCACAGGATACGACCGCCGACCAGTCAGGCAGCAGGGGACATCGAGAAGTCTTAGACAAGACTTCCGAGAATGGAGGGGAGTTGCTAATCAAGCCTGGGGATCCTCACGAGGCCTACACGAGTGTTGACACCGAGCACTACCTGCAACCCACAGATGAcaatggaggaggagaggagggcggGGGAGGTGGTGGAGCGGTGGGAAGAGGGGAAAATGAGATTCTCTGTAATGGTGTAAGCTTGTCAGGGGCCAGCAGTTCAGTGGTGGCCAGTCCTCAGTCAATAGCTGCTGGTGCAAGCATTGAGGGGACGCTTTACAGCTCTCCTCTACCTCAACAGGGTGGGGGGGTGTCAGCTACAACAACTGGGGCCATCAGTCTGGAAGGCTTTGAGGCTTCCTTTGGAAGCCAGTTCTCTGATCTCATCAATGATTTCATCTCAGTTGAGGGGTCTGGAGGTGGGGTGGGGGCGGCTGTGACTGGGGTTCTGATGCCCCAGGAGGGGGCAGCTGGAGAGGAGCAGGGCACAGGAGCAGGCCACCTGCAGGGCTCAGAGGTGGAGCAGGGAGCTCTGGGACTGCTCCAGGAGACTGGGAGGCTGTTTGGTGTGACAGACTACTCCCCAGAGTGGTCTTATCCAGAGGGTGGAGTGAAGGTGCTGATCACAGGTCCGTGGTTGGAGTCAGGCAGTGAGTACAGCTGTCTCTTTGACCACATCAGTGTCCCTGCTGCCCTCATCCAGCCCGGGGTGCTGCGCTGCTACTGCCCAGCCCATGACACAGGACTGGTGATGCTGCAGGTAGCTATGGGTGGTGAGGTCATCTCTTCCTCTGTGGTGTTCGAATACAAGGCGCGTGACCTTCCTGCCCTGCCATCTTCTCAGCATGACTGGTTATCCCTTGATGATACGCAGTTTAGGATGTCCATCCTGGAGCGTCTGGAGCAGATGGAACAGAGAATGGCTGAGATAACCAATCAGAACTCCAGCTCAGCAACCATGGCAACCAAGGGTGGAGgagtggagggaggaggagcCACTGATCAGCAGTCTCAAATTTCTACCGATCAGGGTTCATTCGAGGGTCGTGTTGTAGTGGTGTGTGAGAAGATGATGTCTCAGCCATGCTGGGCTTCATCTAATCAGCTCGTCCACAGTAAGAACTCCAGAGGAATGACCTTACTGCATCTGGCTGCAGCTCAGGGCTATGCAGGGCTCATTCAAACACTCATTCGCTGGCGCACAAAGCATGCCGACAGCATTGACCTTGAGCTCGAGGTGGATCCTCTCAATGTAGATCACTTCTCCTGTACTCCATTGATGTGGGCATGTGCTCTGGGCCACACTGAGGCAGCATTGGTGCTTTACCAGTGGGACCCAAGAGCTCTGGTTATTCCTGATTCGCTGGGACGTTTGCCGCTCAACATCGCACGATCTCGGGGCCACACTCGATTGGCTGAGCTCTTAGAGCAGCTGCAACAGACTCCTCAGGCTCAGGGCCAGCCTGCTGACACTTGGATGGACAGATGGAGAGGAGAGTCACAGACCAGCAGAATAAGCAACAGCCCTACCCCAAACCCTAATTCAGAGCTTAGGAGAGCCAGGACAGAGAACCAGCCAGACAACCATAACCCGAGCTGGAGCCAAACAGGACACCGAACCCAACAGGGAACCCAGGGAGAACAGGGAGGCCCACCCCCAGCCAAGAGACTCAAACCCAGCCCTGACACCCAGCAACAGCTAGCTAACTCAACCCCTGGCCCCAACACCCTCACCTCCCTCCTCAACTCATCCCCCAGTCCTAACCCCCAAcgctctctcctcccaaacacCCTTCAAACTCAACCCTCCAACCTCAGCTGTCAGAACGCACCTCCTGCCAGCTCCAGCCCGAACCGCCCTCAGCTCCCCAGCACGCCATTCTCCCACCTGCAGGCCAGGATAGGGGGGTCTGGAGGGGGCACCAGGTGGAGTCTGAGACAGACTCTGGGGCAGCGTGGCCTAGCCAGGAGGATTCTGGGAAAAGAACGACTGGCCATTCACCTGCGCCAAAGAGTGCTATCTGACaggggagaggagacagagctGCTGACCTATCAGGATAACACAGAGGACTTGCAGATGGACATTACGATGCTAGCTGATCACATCATGGAGGCTTCAACTGTTAGGCTTAAGCAGGAGGCTATGGAGACTGAAAAAGACTCTGGGAAGGTGGGGCGCAGCAGTGATGTCAGGTTACTGTCTGGTTACCTTGGTGAGGTGGAGAGGTTTCTAAACTCCAGGTGCCAGACTCCTAGCCCCAAACCAAACTCTCTCTCAGGGCCTGAGGATCAGCAGAGTCCTCAGGCTAAGCAAGCCCTTTCCTCCCCCTTCGACTGGACCTCCTTCCTCTGTGCAGCTATGAAAGAGGAGAGGTTGAAAACGGACTCCTGTCTATCCATGACTGAGGCAGAGCATGGGGAGCTCTATGAGACCATCAGGCATGCTCTGCACTCCCTCAGAAAACACAAGGGTCCCATTCAGGAACAACGCAAAGAGATTGCAGCAGTGATTCAGCGCTGCTATAAAAGATACAAGCAGTATGCACTTTATAAGAGGATGACCCTGGCAGCCATCCTGATCCAGAGTCGTTTCCGGAGTTTCCATGAGCAGAGGAAGTTCCAACAGAGTCGTAGAGCAGCGGTCCTCATCCAGCAATACTACCGCTCCTATAGACACTCCCTTGGCAGCCTCCTCACGAAAAAACAGAACCAGGCTGCTCGCAAGATCCTGAGATTCCTGCTCCGATGCCGCCACAGCCCCTTGATGGACCATAGGCCTCTGAAACGGGGCCAGAGAGCAGAGAAAGGCCAGGGGTCCTGAGAGCCCACCGCCAGACCCCACACATAGCCCCCTCAGCCTAGGGAAAAAAACTCTTCCCAGACAGACTGAGGACAGGATAGGTGTCCATCATGGcagctcagacagacagagcccAGGGACCTGGCTCTGCCCACAGCACTGATCCTCCTCCACAGTTTCACTGGGAGGCCATCACATTAACCTCATGGCATTCTTTGCACTCTTCATGGGTATGTTTCTTTGCAAAAGCAAGTTGACAAGTCAGACGGGAGAACACGAGGAAGCGCCTGAAGACGACGTCCTGGCATTAATGGCAGCGTCTGGACGTGCTCCGGTGAACAGCTGGCTCAAGATAAAGGCTACTTTGACATGCagaaaatatacaaaacatttCCTGTTTTGTATCTAAACAGTAATccatgaaagaaaaagaaaacataaaccAAAAAACTCTCTTCTATGTTGCATTTGCATGCAAGGTTTTTCCGCTTATTCCTCCTCTCCATCATCCTGAAGATCTATAGTGGCAAATCATTCTGCTGATTCAATATTTCACAACCAACCACTCTGACTCACAGGCTTACAAACCTATTAATCAGTCACCCGATCAAAAGGGGAGGAACTGCACTTGAATGTAAGAGGGGCATTGTTAGATAAGGGTTTGGGTCTGAATAACGATGTCTTAATTTGTTACATGGACTTTGTATGGAGTCGTTCTCAGAGGCAGCACTTTGCTCGCCTGACGTGGTGTGTCCGTGTTTGTTCAATTCAATGCATGTATTTGAGCTACAAGCTCCTGCATGCTTGCCAAACTGCTTTAGTGTTGTTTCTTTTGTATTTCTATGTGAAGTTGTGTCTCACTTACGTCCTCATCAACTTATCCTTGCCCTGTTTAATGTGAACTGTGTAAGGAAAAATTACTCATTTTGGGtgctttttttactttatttatttaagggtctaataatttatttaattggCTCAAGAGTGGTTCAGCTTGAGACTGGTTTTCCCCCCTTGTGTGGTAAAATATGACATGTTCCAATGGTTAAATGTCTCTGTTAGTTTGTTCTTTGCGTGAACCTCTAAATCCTAACTGTGGTTTTGAGGAGAGAGTCACATACCATTGCCTTGACTTCTTCTTGACTCTGAGAGGTCTCTATGCTTGCTCTGTAAAGGACATGGGTCATATACCTGCCCCTATATGGGGCATTGGTCCCCATATTAGCCCATATGGGCGATCAAATCCATATTTTGGACTATTGCATATTCCTGTATATAAACTGACGAGGTAAGGGGATACGAGGACCCTGAAACTTTTTCATAAGAGGACTGTATTTAAGattataaattattttactCCCATAATGAGAACTTAAGACAGAGACCTGGGTACACAGGATGGCTGTATTGCTTGTAaataatgtagatattgcaAACGGAGTAATGTGCATGAGatttaagacaaagaaaaagaaaaaagaacatgTTAGTGGCTATCGACTGTGAGAGGATTTTAACTGCTTCACTTTAAGAGTATCCAGTATAAGTGTTACTGAAAagaacattttgttaaagcatGCAACTGAAAAATCTAATGTTAGAATTATAAGTGGGAAAACAAAGTTAGCTGAAACAATGATCTTTCAGACAAAACATTTAcactttgtgcttttgtttctTGGCTAGCAAAAATGAAACCCTTTTTGCCAGTAGTGCCAATTATTATGAATGCTATTTTTCCTAACAATATGTTACGTTGGGGAAACCAACACCCAAAAGATAGCAGTAAAATCCACagaggcaacacacacacagacagtaaacaGTAGAAGAGATTTAGTACTAGCTCAACCATAGACAACTTCTGAGGTTTGCCTAAGGCAGACTTAAGTGTAGACGACGATGATGCAAGTATGAAAATTATAATAATGGTGATAAGATGATGATGGCCGTTTTAATATGAATGCAATGAATGGTGACCCAAAATGGATGAGGGTGCTACATTCTTTACAATATGGTTGTGCTTCAGCAACATACTAGCTTTTATTAAGACCATTAATCACACCTACAGCGGATCCAGCCTGGCCTCCAGTCAAAGCTTTCCATCTTCAAACAGAATGTCTCCTCCCCCCCGCTTTTTACATATCATTtgattaatttttattttctccTCATTGTCACTGCCATTATGATACGACGTCTACTTTAGACTTCTGGAAAGCTCTGTTTAGAAAGTGCCTGCTCAATAACAGAAAAGTGCAAGCTAATATCAGGAAATATCTATTGTATGTCCTCCAAAAGGTTGCCAGTTACTTGTTTATTTTCCTAAATTGTGTGTTAAAAATGAACTTGACAGTGTTGAACTTGATCCGAGTCTAAGTTAGAAGCTCGTATTTGTCAGTGGTATGAATGAATGCTCATGGCCTGATTGATGCTATGTGTTGCTTTATGAGACAAACCAGTAATTACAGTTTCACTTTATGCCCCACTTGTGTGTCAGTTGTGCAGTATCAGAACAAGAAAAACCATAGAATTCAGCCTCTGTGTATGAAAGGCACTGTCACGAGTCTATTCAAGGTCCCAGTGTTGCTGTTGGGAAAAAGATGCGTTCTCTAGCAGGGACTCGCTTTGTCTGTCTTTCCTTAAAAAATTGTTCTTGCAGCATTTAAGTGAAAGCATAACCCAACAGTTTTCCAGAGGACAAAATAGCTgtcactttctttctttgtctttctctttcactcatgttctctctcttctcacacacacacaacacacacacacacacacacacacacacacacgtcaatacatacatacagtacacaaatgtacacagacacaaaaaatgccacactctttctctctgtgcttATGTCTTTGGGAACAATTAAATCTCTCCCTTAGATTTTACTCAGGGTTAAAGAACAGGGAGATGGTATGTGGAGTGTGATGCTCGCCGACACAGAGTTGTACCGCTACTGGTGACTGTGTATATTGTatgcatatatgtatgtgtacatATTTGTGTAGGTTAGGGATACTCCAGTTGTTCATTCACTAATCTAGTATctacaaattttaaaataatgttctTGATTGACGCACTCCTTCTGAGTCTCATTTTGTGAAGAAGCAAATGTGATGTTTGTTTCATCCGAGGTGTGTTTGCATCACTTTTtctacaagaaaaaaaaatctccaaatCCCATATTTTATAGGATTCCGTTTGATTATAAACTAAATTTAAAGCAAGTAATGAGTGATATTTCTATTTCTATACTTGCTCTTGTTTTAAACGCACAAGATTCTTGATACAAGtaattgttaaataaaaataggtaACGGCCATGTATCAACTCAATTTTCTTAATTAAAAAAGTTGTAAGAGATAGTATATTTAAAGATTTACAATTGGAAACATCTCTATAATGTGTGTTTCACATGTTTCCTCAATTTTTATCACACTGAGAGACAGCCATGGTTAGAATGGCACTGTCAAGAGATTCCTGTTACGATATCACTTGAGCATCCTCTTAAACTGCCCCTCCTCTCACATCAGCACAACTCAAGTCACAAAGAACACTGCTTTAGACTCcttcatatattatataatatatatgcacacacagacaaatatacacacactccAACATCCAAATGCTAGTGcttatcaacacacacacagaatacataCTCATACACATGAAACTAGACACAGATTGCAGATAATCCATCAATATGTTCATGTTTTTGGAGAGGACAGTGACTGTAAAAAGAGTATGTAGagtagaaaaagtaaaaaaatacaatgaagAAATATTGCCATAGTAGACAGCTGGTAGACATGCACAGAGATGGCCTCTGTTTTCATAAGTCTGCCTAGAAATGAATGGTATAACCTTTCAGGCCTTGTTTTGAGAGGGCGTGGCCAAACACCACATTGCATGCTAGAATGGTAGACCCTTATAGATAATCTATGGCTAGACCTCTCCTTGCCTTCTTCTGCCCTCTTCTTTCACCccgtcttccctctctctctcgctctctctgtctctctctctctcatttcctgtTGTATTCCCACCTTGCCTGCTGTTGTGTTCTCCATGCCTATCTCAGTCTTTCAttcctgttttcttttctttttttgtagcctagtttttactttgttttacCAACGTGCATGCACAAGCATCACTAAATTGTTGAtgtttttaaaagaatattttgTTGCTGAGGCCATGCAAAGTGTTTTGAATATTGCCCTTATATGTGGAAAATGTCTTCTGAATGCTTTACATAATTTCTGCTGTAAAATGAAAtcagaataaaaagaaaatttgcactttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50675 lncRNA upstream 57465 12450052 ~ 12450548 (+) True G37742
TU50646 lncRNA upstream 122367 12385390 ~ 12385646 (+) True G37729
TU50645 lncRNA upstream 122797 12384991 ~ 12385216 (+) True G37728
TU50642 lncRNA upstream 124278 12383456 ~ 12383735 (+) True G37725
TU50620 lncRNA upstream 207518 12300250 ~ 12300495 (+) True G37718
TU50696 lncRNA downstream 24477 12584657 ~ 12585811 (+) True G37761
TU50703 lncRNA downstream 39260 12599440 ~ 12599671 (+) True G37768
TU50705 lncRNA downstream 43618 12603798 ~ 12606662 (+) True G37769
TU50715 lncRNA downstream 101591 12661771 ~ 12661985 (+) True G37778
TU50722 lncRNA downstream 120948 12681128 ~ 12682749 (+) True G37783
XM_039798725.1 mRNA upstream 11778 12488697 ~ 12496235 (+) True phf13
XM_039798006.1 mRNA upstream 68638 12394589 ~ 12439375 (+) False LOC120557555
XM_039798009.1 mRNA upstream 68638 12400906 ~ 12439375 (+) True LOC120557555
XM_039798007.1 mRNA upstream 68638 12400906 ~ 12439375 (+) False LOC120557555
XM_039798010.1 mRNA upstream 71287 12394585 ~ 12436726 (+) False LOC120557555
XM_039797923.1 mRNA downstream 1649 12561829 ~ 12582404 (+) True hipk1b
XM_039797925.1 mRNA downstream 1649 12561829 ~ 12582404 (+) False hipk1b
XM_039797926.1 mRNA downstream 1649 12561829 ~ 12582404 (+) False hipk1b
XM_039797927.1 mRNA downstream 1649 12561829 ~ 12582404 (+) False hipk1b
XM_039797924.1 mRNA downstream 4953 12565133 ~ 12582404 (+) False hipk1b
TU50647 other upstream 120838 12386171 ~ 12387175 (+) True G37730
XR_005639029.1 other upstream 229389 12274760 ~ 12278624 (+) True LOC120557851
TU50615 other upstream 253039 12253066 ~ 12254974 (+) True G37714
TU50430 other upstream 702619 11780178 ~ 11805394 (+) True G37597
TU50377 other upstream 1113679 11390739 ~ 11394334 (+) False LOC120557336
TU50865 other downstream 155980 12716160 ~ 12719472 (+) False cdab
XR_005638946.1 other downstream 175687 12735867 ~ 12741048 (+) False b3galt6
TU50929 other downstream 265349 12825529 ~ 12857413 (+) False kif21b
XR_005639082.1 other downstream 631598 13191778 ~ 13191911 (+) True LOC120558254
XR_005639080.1 other downstream 633067 13193247 ~ 13193320 (+) True LOC120558251

Expression Profile