ppm1j (LOC104918364,LOC103356064,LOC101471645,LOC102210217)


Basic Information

Item Value
gene id ppm1j
gene name LOC104918364,LOC103356064,LOC101471645,LOC102210217
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 25372571 ~ 25393062 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039799060.1
CCAGGGCTGGCTGCGCGTCCCTGTGAAGCCCTGCCTTCTGAGATGAGTTGTAGGCTAGCCATCTGCCGGATCACAGCCTGTACGCAGCCAGCGAGAGCTTTATATTCTCTTTGAATGAGGAAAACATCGTGTCTGCCTGCCTGAAAGCTGTCACATGGGGCcgaggagagagggggtgggATTCGCTTCCTGAAATGCTTCTCGTCACTGgctgtgtattgtttgttttctctatcTAACGTAACATCGCATCGCGTTTCATTTCCCGTCCGGATCTTTTGCTGTCGGCGCTGATGATGATCAGCAAAGTTAAAAACGCTATGTCCACTCTGGTGGGAGGGATGATGCCGCACggacaccaccaccaccacaaccatCACTCAGGTGGTGGCCAGACCTGTGGACCGGACAGCCTGCCGCCGCGCTTCCCCTACGGCCGGCCGGATTTCTTGGACCTCACCCCGGAGCTCCTGCAGTACTCCACCGAGCACGCGTCACGGCCGGTGCTCACGTTAAAGAGAGACAGCAGGCTTCCCTGGCGGACAGGATACGCAGAGGTGATCAATGCGGGGAAGAGCATGCTGAACGAGGACCAGGCCTCTTGTGAGAAATTGTTTGTGAAGAAGCCGAGCAGCAAACAGCGCAACTCCTCCCTGCTGGAGGACAATGGGGATGGCACGGGAATCCCTCTTCACTTTTGGGGCGTGTATGATGGACACGCAGGTTCTGGAGCCGCCATCATGGCCTCCAAGCTTCTTCACCGCCTCATTAGAGACCGTTTGGGAGAAATCTTCCACCTGCTGGAGAACCCCACCAGTGCACCTCCTATCTGCCTGGCCAAGAACGGCAGCCCCTACCAGGTGGACACCAAGAAGGGAGCTGCACAGGAAACAGAAGACCCCGATGCTGTCAACGACTCCTCATTACGCTTTCATATGGAGAAGGTTGTCAGTTTGGAGAGCCTGGTGATGGGAGTCATAGAAACCGCCTTCACACAGATGgatGACCTAATTGAAAAGGAAAAATTGTCGTATACCAtctctggtggatgttgtgcCTTAGCTGCCATTTATTTAATGGGGAAACTCTACATTGCCAATGCTGGAGATAGCAGGGCCATAATCATACGAAATAATGAAGTTATTCCCATGACAAATGAATTCACACCTGAGTCAGAGAGGCAACGTCTACAGTATCTGGGCTTCCTGAGGCCAGAGCTCCTGGGTAATGAGTTCACTCACATTGAGTTCCCTCGTAGGATCCAGCACAGTGAGCTGGGCAAAAAGATGCTCTACAGAGACCACACCATGACTGGCTGGGCTTATAAGACGATCGTTGAAGATGATCTGAAATTCCCCCTGATATACGGAGAGGGTAAAAAGGCACGTGTCATGGCGACAATCGGAGTGACCCGTGGGCTGGGAGACCATGATCTGAAGGTGTACAACTCCAACATTTATATCAAGCCCTTCCTCTCATGCGTCCCTGAGGTGAAGGTTTATAATGTGGATGAAAACAAGCACGGCCCAGACGATGTCTTGGTCATGGGCACAGATGGATTGTGGGACGTAACAACAGACAGGGAAGTGGCAGATGCTGTGTCAGCTTACTTATCCTGCTGTGATCCATCTGATCCCATGAGGTACACTCTGGCAGCCCAGGACCTGCTGATGAGGTCCCGAGGCGTGCTGAAAGAGCGCGGCTGGCGGCTACCCAATGAAAGACTGGGCTCAGGCGATGACATCACTGTGTTTGTCATCCCACTGGCGGGGCAGGAGTCAGAGACATGACAAGGTGTTGCAGCGACCGCTATTACAGGGATCAAGCTTTAGGGTCCTTCCCACGGTCCCTCCAAGCTCCTTAAACCCTGGACCGACGGGGCGGCGGGAGAAGAAAACACCTTTGTCATCGGAGAAGACTCGGGTCTGAGCCGCACCTTCATCAACCCagaccaacacattctcactcccagcgctTCGAaaagcgacgcttggtcaggtacCTTTGCCGTTgttagtagtctatatccacgacgttccacttccaggattgctccattgctgccggaaattccgccagcaATTCCGGTCGGATGTCCGTCACGTTCCGCTggtgaactgctcctcagatctctgcagggtaaatccagacagctagctagactacagtatatgtccaatctgggttttctgttgcacgactaaaacaacttttgaatatacacgttccaccaaaacaagttccttcccgaggctattttgcagcagcaccgtggctTTGCCCGGTGCTTAGTGCAACCCATGatgattatgattggtttaaagaattgccaataaaccagagcatgtttctctcccatcccggaatgttgtgtggactagccagaccctcctccgcagcgctgtgaaggaaggtctgg

Function

NR:

description
protein phosphatase 1H-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K17503 PPM1H, ARHCL1; protein phosphatase 1H

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039799060.1 True 2419 mRNA 0.53 10 25372571 25393062

Neighbor

gene id symbol gene type direction distance location
LOC120557749 LOC103356055,LOC100694803,LOC103386563 coding downstream 4382 25347842 ~ 25368189 (-)
LOC120557765 NA coding downstream 276053 25092524 ~ 25096518 (-)
LOC120556727 NA coding downstream 285595 25082288 ~ 25086976 (-)
LOC120557744 LOC104935382,LOC103372359,LOC100690876,LOC102213271,LOC101077963 coding downstream 324497 25041079 ~ 25048074 (-)
LOC120557743 LOC103372358 coding downstream 335722 25026381 ~ 25036849 (-)
si:ch211-105j21.9 NA coding upstream 308471 25701533 ~ 25704395 (-)
slc5a8l LOC104941457,LOC107385050,LOC108231644,LOC106517671,LOC100705258,LOC102208231 coding upstream 314300 25707362 ~ 25714683 (-)
ngfb ngf,LOC104950112,LOC103386552 coding upstream 362690 25755752 ~ 25785177 (-)
rplp2 rplp2,LOC104941383,LOC104918380 coding upstream 492163 25885225 ~ 25887817 (-)
LOC120558087 LOC103356190,LOC104941391,LOC104918381 coding upstream 499149 25892211 ~ 25894753 (-)
G41604 LOC103356036,LOC104945687 non-coding downstream 46603 25325507 ~ 25325968 (-)
G41593 NA non-coding downstream 78317 25293964 ~ 25294254 (-)
G41557 NA non-coding downstream 286538 25085419 ~ 25086033 (-)
G41514 NA non-coding downstream 425827 24942816 ~ 24946744 (-)
G41511 NA non-coding downstream 439743 24923881 ~ 24932828 (-)
trnas-uga NA non-coding upstream 133058 25526120 ~ 25526201 (-)
G41632 NA non-coding upstream 232158 25625220 ~ 25625446 (-)
G41663 NA non-coding upstream 329746 25722808 ~ 25723838 (-)
G41672 NA non-coding upstream 357408 25750470 ~ 25750713 (-)
G41699 NA non-coding upstream 438899 25831961 ~ 25832682 (-)
ncoa5 NA other downstream 14637 25310745 ~ 25357934 (-)
manbal manbal other downstream 347510 25022436 ~ 25025061 (-)
LOC120556806 NA other downstream 484345 24886070 ~ 24888226 (-)
G41167 slc32a1,LOC103135573,LOC102216414,LOC106515126 other downstream 2218835 23151085 ~ 23153736 (-)
LOC120556776 LOC102209485,LOC104950336 other downstream 2406608 22931491 ~ 22965963 (-)
tspan2a tspan2 other upstream 330906 25723968 ~ 25740106 (-)
LOC120557963 grm4,LOC108231655,LOC100700221,LOC102289456,LOC104955002 other upstream 931684 26324746 ~ 26483541 (-)
G41944 NA other upstream 1385237 26778299 ~ 26894030 (-)
LOC120557442 hes5,LOC104956007 other upstream 3348736 28741798 ~ 28750233 (-)
LOC120556842 rpp14,LOC102775666,LOC101465350,LOC103374991 other upstream 4643320 30036382 ~ 30037321 (-)

Expression


Co-expression Network