RNA id: XM_039799060.1


Basic Information

Item Value
RNA id XM_039799060.1
length 2419
RNA type mRNA
GC content 0.53
exon number 10
gene id ppm1j
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 25372571 ~ 25393062 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCAGGGCTGGCTGCGCGTCCCTGTGAAGCCCTGCCTTCTGAGATGAGTTGTAGGCTAGCCATCTGCCGGATCACAGCCTGTACGCAGCCAGCGAGAGCTTTATATTCTCTTTGAATGAGGAAAACATCGTGTCTGCCTGCCTGAAAGCTGTCACATGGGGCcgaggagagagggggtgggATTCGCTTCCTGAAATGCTTCTCGTCACTGgctgtgtattgtttgttttctctatcTAACGTAACATCGCATCGCGTTTCATTTCCCGTCCGGATCTTTTGCTGTCGGCGCTGATGATGATCAGCAAAGTTAAAAACGCTATGTCCACTCTGGTGGGAGGGATGATGCCGCACggacaccaccaccaccacaaccatCACTCAGGTGGTGGCCAGACCTGTGGACCGGACAGCCTGCCGCCGCGCTTCCCCTACGGCCGGCCGGATTTCTTGGACCTCACCCCGGAGCTCCTGCAGTACTCCACCGAGCACGCGTCACGGCCGGTGCTCACGTTAAAGAGAGACAGCAGGCTTCCCTGGCGGACAGGATACGCAGAGGTGATCAATGCGGGGAAGAGCATGCTGAACGAGGACCAGGCCTCTTGTGAGAAATTGTTTGTGAAGAAGCCGAGCAGCAAACAGCGCAACTCCTCCCTGCTGGAGGACAATGGGGATGGCACGGGAATCCCTCTTCACTTTTGGGGCGTGTATGATGGACACGCAGGTTCTGGAGCCGCCATCATGGCCTCCAAGCTTCTTCACCGCCTCATTAGAGACCGTTTGGGAGAAATCTTCCACCTGCTGGAGAACCCCACCAGTGCACCTCCTATCTGCCTGGCCAAGAACGGCAGCCCCTACCAGGTGGACACCAAGAAGGGAGCTGCACAGGAAACAGAAGACCCCGATGCTGTCAACGACTCCTCATTACGCTTTCATATGGAGAAGGTTGTCAGTTTGGAGAGCCTGGTGATGGGAGTCATAGAAACCGCCTTCACACAGATGgatGACCTAATTGAAAAGGAAAAATTGTCGTATACCAtctctggtggatgttgtgcCTTAGCTGCCATTTATTTAATGGGGAAACTCTACATTGCCAATGCTGGAGATAGCAGGGCCATAATCATACGAAATAATGAAGTTATTCCCATGACAAATGAATTCACACCTGAGTCAGAGAGGCAACGTCTACAGTATCTGGGCTTCCTGAGGCCAGAGCTCCTGGGTAATGAGTTCACTCACATTGAGTTCCCTCGTAGGATCCAGCACAGTGAGCTGGGCAAAAAGATGCTCTACAGAGACCACACCATGACTGGCTGGGCTTATAAGACGATCGTTGAAGATGATCTGAAATTCCCCCTGATATACGGAGAGGGTAAAAAGGCACGTGTCATGGCGACAATCGGAGTGACCCGTGGGCTGGGAGACCATGATCTGAAGGTGTACAACTCCAACATTTATATCAAGCCCTTCCTCTCATGCGTCCCTGAGGTGAAGGTTTATAATGTGGATGAAAACAAGCACGGCCCAGACGATGTCTTGGTCATGGGCACAGATGGATTGTGGGACGTAACAACAGACAGGGAAGTGGCAGATGCTGTGTCAGCTTACTTATCCTGCTGTGATCCATCTGATCCCATGAGGTACACTCTGGCAGCCCAGGACCTGCTGATGAGGTCCCGAGGCGTGCTGAAAGAGCGCGGCTGGCGGCTACCCAATGAAAGACTGGGCTCAGGCGATGACATCACTGTGTTTGTCATCCCACTGGCGGGGCAGGAGTCAGAGACATGACAAGGTGTTGCAGCGACCGCTATTACAGGGATCAAGCTTTAGGGTCCTTCCCACGGTCCCTCCAAGCTCCTTAAACCCTGGACCGACGGGGCGGCGGGAGAAGAAAACACCTTTGTCATCGGAGAAGACTCGGGTCTGAGCCGCACCTTCATCAACCCagaccaacacattctcactcccagcgctTCGAaaagcgacgcttggtcaggtacCTTTGCCGTTgttagtagtctatatccacgacgttccacttccaggattgctccattgctgccggaaattccgccagcaATTCCGGTCGGATGTCCGTCACGTTCCGCTggtgaactgctcctcagatctctgcagggtaaatccagacagctagctagactacagtatatgtccaatctgggttttctgttgcacgactaaaacaacttttgaatatacacgttccaccaaaacaagttccttcccgaggctattttgcagcagcaccgtggctTTGCCCGGTGCTTAGTGCAACCCATGatgattatgattggtttaaagaattgccaataaaccagagcatgtttctctcccatcccggaatgttgtgtggactagccagaccctcctccgcagcgctgtgaaggaaggtctgg

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K17503 PPM1H, ARHCL1; protein phosphatase 1H

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55940 lncRNA downstream 14637 25310764 ~ 25357934 (-) False ncoa5
TU55943 lncRNA downstream 46603 25325507 ~ 25325968 (-) True G41604
TU55924 lncRNA downstream 78317 25293964 ~ 25294254 (-) True G41593
TU55883 lncRNA downstream 286538 25085419 ~ 25086033 (-) True G41557
TU55827 lncRNA downstream 425827 24942816 ~ 24946744 (-) False G41514
TU55971 lncRNA upstream 232158 25625220 ~ 25625446 (-) True G41632
TU56015 lncRNA upstream 329746 25722808 ~ 25723838 (-) True G41663
TU56017 lncRNA upstream 330906 25723968 ~ 25740094 (-) True tspan2a
TU56028 lncRNA upstream 357408 25750470 ~ 25750713 (-) True G41672
TU56063 lncRNA upstream 438899 25831961 ~ 25832682 (-) True G41699
XM_039798340.1 mRNA downstream 4382 25347842 ~ 25368189 (-) False LOC120557749
XM_039798341.1 mRNA downstream 4400 25347842 ~ 25368171 (-) False LOC120557749
XM_039798339.1 mRNA downstream 4425 25347842 ~ 25368146 (-) True LOC120557749
XM_039798338.1 mRNA downstream 4426 25347842 ~ 25368145 (-) False LOC120557749
XM_039798342.1 mRNA downstream 14434 25347842 ~ 25358137 (-) False LOC120557749
XM_039799213.1 mRNA upstream 308471 25701533 ~ 25704395 (-) False si:ch211-105j21.9
XM_039799214.1 mRNA upstream 308471 25701533 ~ 25704391 (-) False si:ch211-105j21.9
XM_039799211.1 mRNA upstream 308471 25701533 ~ 25704291 (-) True si:ch211-105j21.9
XM_039799215.1 mRNA upstream 308471 25701533 ~ 25704274 (-) False si:ch211-105j21.9
XM_039797468.1 mRNA upstream 314300 25707362 ~ 25714683 (-) True slc5a8l
TU55835 other downstream 347540 25022850 ~ 25025031 (-) False manbal
TU55398 other downstream 2218835 23151085 ~ 23153736 (-) True G41167
TU54925 other downstream 3602066 21765703 ~ 21770505 (-) False iars1
XR_005638952.1 other downstream 3823025 21520669 ~ 21549546 (-) False slc6a11b
XR_005638883.1 other downstream 4985521 20281574 ~ 20387050 (-) False kaznb
unassigned_transcript_203 other upstream 133058 25526120 ~ 25526201 (-) True trnas-uga
TU56362 other upstream 931855 26324917 ~ 26341192 (-) False LOC120557963
TU56437 other upstream 1420146 26813208 ~ 26894030 (-) False G41944
unassigned_transcript_204 other upstream 2180594 27573656 ~ 27573727 (-) True trnap-agg_2
XR_005638968.1 other upstream 3348736 28741798 ~ 28750233 (-) False LOC120557442

Expression Profile