RNA id: TU56362


Basic Information

Item Value
RNA id TU56362
length 1895
RNA type TUCP
GC content 0.42
exon number 4
gene id LOC120557963
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 26324746 ~ 26483541 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGGAAAGCACTGTGGAGAGTCACAaataataaacaacaaacaagaTATTCAAGAAGAGGTCACATCTGGGGAGTTAAATGTTACTCTGCTTTGATGGAAAAACCAGCAGGGACCTACTGGGGGAGTCACTCAATGTACATCCAAACAACCACACTGACCATCTCTGTGAGCCTGAGCGCCTCAGTGTCCCTTGGGTTGCTCTACATGCCAAAGGTCTATGTGGTTCTTTTCCACCCCGAGCAGAATGTGCCCAAGCGCACACGCAGCCTCAAGGCCGTGGTTACCGCCGCCACCATGTCCAACAAATTCAACCCCAAGGCCGGACTCAGACCCAACGGAGAAGCCAAGACCGAGCTGTGCGAAAGCCTCGAAACACAAACTTTCCCAACAAAGCAAACCTACATCAGCTACAGCAACCATGCAATCTAAGGGACAATGGTTGTTAGCATAATTCAGGATTTTCCACCTAGACGGAGAAAAACATGCAGTGGGGTTTCACACAGCCGGCATAAGAAATGGATGTGTCATTGTACGGGTGGAGATCACAGAAGCGTTGCCCAAAGACGTGACTTGGCGAGGAGAGACCACAGGGATGGACTAAACAGGGGACCAGAACAGATAACAGTACAATTGTAAGGTTCCATCTTCTCTCTGCCTCACAagaatacacaaaaaaaaaagaaaaatgagaaaTACTTGCATGGAAGAGGCCTGGAGACTAATGGATGGAGCTTTCCTTTTGAGTGTTTACATTTCAGCTATGCCCTCTTTCAAAGACTTGTCTGTCATCTTGAGCAGTGCTGACTGAAACCGAACTTAAATCAAGAATATGTTCAGGTGTTCTCAATGTCGTAATTGATCTTAAACCCTCAAGGCATCACAAGGGATTAATCAACACCAAAAAGGCATGAAATCATGACCAATGGATTTCTATAGGGGGGagggttgtgtttgtttgtatttctaaATGTATTCCGGTATCATGAGTCAAATTACTGGAAATGGTGATCATCTCACCAATGCAACCAATCTGTACCAGACTCCATGCCGTTTGTCCCCCTCTTCCAGGTTTCCACTGAGTCAATAAGAAGAACTACACTTAGATGGTCTCTGCCAATTTTGAGCATGCCACatcctgtgttgtgttgttaaaaaaaataaaataaaagaaaaacatttagaaaagaaaaaatattatcTTTGGAATGCGTTTAAACTCTGTTGCAGCGTTGTTAACACTTGTTTAGGCCCGGGCCTATTgtacgttaaaaaaaaaaaattctcaaatGGTGAAGGTCTAGTGAGTGATTATTTATCTGTGCTTAAGTGAGGTCATGACTGCATTACCAGCTAGCCCAAGGCTTTCACTGCCCTCCGCATACCTGTCTGTGCTTTGAAACAGTGGCTTGTGGTTAAAATAAACAGTATTTTATCCGGGAGATGTTCCTGTAAGCTGTCGTCCAGGATGACCCTCCCATCACTGCCACCAGCTATTCTCTTGGTAAACGAAAATCGAATTCCAAAAGTATACAATATCTCTATCAATCACCCTCAGCTCGCTGAACAGATTAATAGTTGGCTTCATGCAGTATAAAAGCCCTCTAATGTcttgggaaaaaacattgtggGGTCATTTGTGTTGTGAATTCAATGCTGATCTTCATGCCTCCCTCTGTATTACTTTCAACACCATTTGTGTTGCAGAATAAAATGTGAGTGCTGACCAAATTAAATGGCAAGTTAATGTATGTTATTAAATAGATTGATGATGTCTGCTTTGTGTCCTGACATATCTTAAAATTGGGGAAAATGTACAAAAAGATACAGTGCCTGGCTATCTGATTATGTATTTGTAAAACCTCATGAAAACTAATGAAGTGTGTGAagcatgttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56215 lncRNA downstream 151277 26169460 ~ 26173640 (-) True LOC120557652
XR_005638989.1 lncRNA downstream 151277 26170267 ~ 26173640 (-) False LOC120557652
TU56137 lncRNA downstream 327410 25995974 ~ 25997507 (-) True G41744
TU56094 lncRNA downstream 387886 25936757 ~ 25937031 (-) True G41725
TU56090 lncRNA downstream 391871 25932287 ~ 25933046 (-) True G41721
TU56369 lncRNA upstream 176731 26517923 ~ 26540946 (-) True G41893
TU56378 lncRNA upstream 244628 26585820 ~ 26586237 (-) True G41902
TU56384 lncRNA upstream 288624 26629816 ~ 26633651 (-) True G41906
TU56435 lncRNA upstream 437107 26778299 ~ 26816377 (-) True G41944
TU56449 lncRNA upstream 590583 26931775 ~ 26932007 (-) True G41956
XM_039797694.1 mRNA downstream 34921 26261888 ~ 26289996 (-) False igfn1.1
XM_039797695.1 mRNA downstream 34921 26261888 ~ 26289996 (-) False igfn1.1
XM_039797693.1 mRNA downstream 34921 26261888 ~ 26289996 (-) True igfn1.1
XM_039797696.1 mRNA downstream 34922 26261888 ~ 26289995 (-) False igfn1.1
XM_039797697.1 mRNA downstream 64127 26249121 ~ 26260790 (-) True LOC120557407
XM_039797963.1 mRNA upstream 201497 26542689 ~ 26548775 (-) True rps10
XM_039796678.1 mRNA upstream 247807 26588999 ~ 26601435 (-) True LOC120556869
XM_039798391.1 mRNA upstream 275124 26616316 ~ 26627302 (-) True ilrun
XM_039798307.1 mRNA upstream 360235 26701427 ~ 26711118 (-) True LOC120557731
XM_039798308.1 mRNA upstream 373192 26714384 ~ 26745049 (-) True phc2b
unassigned_transcript_203 other downstream 798716 25526120 ~ 25526201 (-) True trnas-uga
TU55835 other downstream 1299886 25022850 ~ 25025031 (-) False manbal
TU55398 other downstream 3171181 23151085 ~ 23153736 (-) True G41167
TU54925 other downstream 4554412 21765703 ~ 21770505 (-) False iars1
XR_005638952.1 other downstream 4775371 21520669 ~ 21549546 (-) False slc6a11b
TU56437 other upstream 472016 26813208 ~ 26894030 (-) False G41944
unassigned_transcript_204 other upstream 1232464 27573656 ~ 27573727 (-) True trnap-agg_2
XR_005638968.1 other upstream 2400606 28741798 ~ 28750233 (-) False LOC120557442
TU57462 other upstream 3784569 30125761 ~ 30130281 (-) False romo1
TU57583 other upstream 4297779 30638971 ~ 30679015 (-) False LOC120558045

Expression Profile