romo1 (romo1,LOC102788570)


Basic Information

Item Value
gene id romo1
gene name romo1,LOC102788570
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 30125751 ~ 30130317 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU57462
tcctttATCCGGTTATGGAGGTCTGCTAGAAAGGCATTTAAACGCAGCTGTGCTCCAAACTACGACAATCCTCCAGTTAGGAACCGCAAAACCCAGcttattttaaatacatagtTCAAGATGCCAGTGGCTGTAGGTCCATATGGCCAGACCCAACCTAGCTGTTTTGACCGGGTCAAGATGGGCTTCATGATGGGGTTTGCAGTGGGAATGGCTGCTGGTGCCATGTTTGGCACGTTCTCCTGTCTCAGGATTGGAATGCGTGGCAGGGAGCTGATGGGAGGAGTGGGGAAGACCATGATGCAGAGCGGGGGGACGTTCGGCACCTTCATGTCCATCGGTATGGGCATCCGCTGCTGAGGAGGAACAACCTCCTCCACACAACCATACAGCTATGGGACTTGTCCAGTGACCACACGTACAGCTCTCTGTCTGCTCAATGCCGTCACACTCTCAACCAACAGTCTAGTTTTGTCAATAAAGTTCAGAT
>XM_039798050.1
TCCCCTCTTTATCTGTCTCCTCCgtccttctctccttcctttATCCGGTTATGGAGGTCTGCTAGAAAGGCATTTAAACGCAGCTGTGCTCCAAACTACGACAATCCTCCAGTTAGGAACCGCAAAACCCAGcttattttaaatacatagtTCAAGATGCCAGTGGCTGTAGGTCCATATGGCCAGACCCAACCTAGCTGTTTTGACCGGGTCAAGATGGGCTTCATGATGGGGTTTGCAGTGGGAATGGCTGCTGGTGCCATGTTTGGCACGTTCTCCTGTCTCAGGATTGGAATGCGTGGCAGGGAGCTGATGGGAGGAGTGGGGAAGACCATGATGCAGAGCGGGGGGACGTTCGGCACCTTCATGTCCATCGGTATGGGCATCCGCTGCTGAGGAGGAACAACCTCCTCCACACAACCATACAGCTATGGGACTTGTCCAGTGACCACACGTACAGCTCTCTGTCTGCTCAATGCCGTCACACTCTCAACCAACAGTCTAGTTTTGTCAATAAAGTTCAGATGACaaatgca

Function

symbol description
romo1 Predicted to be involved in several processes, including positive regulation of reactive oxygen species metabolic process; protein targeting to mitochondrion; and replicative senescence. Predicted to act upstream of or within defense response to bacterium. Predicted to be located in mitochondrion. Predicted to be part of TIM23 mitochondrial import inner membrane translocase complex. Is expressed in several structures, including alar plate midbrain region; liver; optic tectum; optic vesicle; and retina. Orthologous to human ROMO1 (reactive oxygen species modulator 1).

NR:

description
reactive oxygen species modulator 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU57462 False 490 TUCP 0.51 3 30125761 30130281
XM_039798050.1 True 536 mRNA 0.51 3 30125751 30130317

Neighbor

gene id symbol gene type direction distance location
lmcd1 lmcd1 coding downstream 41880 30064169 ~ 30083871 (-)
LOC120557999 abhd6 coding downstream 70713 30045051 ~ 30055038 (-)
rpp14 rpp14,LOC102775666 coding downstream 81123 30037241 ~ 30044628 (-)
pxk NA coding downstream 90821 30000938 ~ 30034930 (-)
pdhb pdhb,LOC102799652 coding downstream 135258 29981169 ~ 29990493 (-)
LOC120556903 NA coding upstream 201716 30332033 ~ 30333751 (-)
ywhaba ywhab,LOC101154846,LOC103464293,LOC106947331,LOC102237816,LOC103143238,LOC107100836 coding upstream 316441 30446758 ~ 30474218 (-)
rims4 rims4 coding upstream 395651 30525968 ~ 30608052 (-)
LOC120557908 NA coding upstream 673064 30803381 ~ 30804569 (-)
LOC120557086 grip2,LOC106537019,LOC106530820,LOC103464302,LOC103143242,LOC103386517,LOC107691200 coding upstream 890455 31020772 ~ 31374048 (-)
G42717 LOC102788290,LOC105938248,LOC100694607,LOC103460371,LOC103023575,LOC107097993,LOC101480083 non-coding downstream 26816 30049077 ~ 30098935 (-)
G42692 NA non-coding downstream 118312 30006081 ~ 30007439 (-)
G42691 NA non-coding downstream 119831 30002658 ~ 30005920 (-)
G42689 NA non-coding downstream 127947 29997574 ~ 29997804 (-)
G42643 NA non-coding downstream 247908 29877510 ~ 29877843 (-)
G42743 NA non-coding upstream 8026 30138343 ~ 30139513 (-)
G42745 LOC103358868 non-coding upstream 65990 30196307 ~ 30204369 (-)
G42750 NA non-coding upstream 169002 30299319 ~ 30299611 (-)
G42773 NA non-coding upstream 211425 30341742 ~ 30342067 (-)
G42827 tomm34,LOC102784590 non-coding upstream 308180 30438497 ~ 30443211 (-)
LOC120556842 rpp14,LOC102775666,LOC101465350,LOC103374991 other downstream 88430 30036382 ~ 30037321 (-)
LOC120557442 hes5,LOC104956007 other downstream 1375518 28741798 ~ 28750233 (-)
G41944 NA other downstream 3231721 26778299 ~ 26894030 (-)
LOC120557963 grm4,LOC108231655,LOC100700221,LOC102289456,LOC104955002 other downstream 3642210 26324746 ~ 26483541 (-)
tspan2a tspan2 other downstream 4385645 25723968 ~ 25740106 (-)
LOC120558045 NA other upstream 508654 30638971 ~ 30679082 (-)
LOC120557755 grip2,LOC103357845,LOC102782189 other upstream 816015 30946332 ~ 31015647 (-)
LOC120557401 blcap other upstream 2557703 32688020 ~ 32747110 (-)
podxl2 podxl2,LOC102777608 other upstream 2620475 32750792 ~ 32783836 (-)
LOC120557803 NA other upstream 3057751 33188068 ~ 33223258 (-)

Expression


Co-expression Network