G42717 (LOC102788290,LOC105938248,LOC100694607,LOC103460371,LOC103023575,LOC107097993,LOC101480083)


Basic Information

Item Value
gene id G42717
gene name LOC102788290,LOC105938248,LOC100694607,LOC103460371,LOC103023575,LOC107097993,LOC101480083
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 30049077 ~ 30098935 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU57437
CGCcactttattaaatatttacatGACAAAGCGCAGAAGCGGTTTTAACGCCTCAGACAGAAATGATCACGACACAGGCAGCATTTAAAAaaggtgttttgtgtgtataccGTCGTCTGATGCTAGAAACAAAACATAATGCCAAAGTTTCCTTTAAGATAATTTATTTTGTACAGTAAAACAGAGGTTCAGAGGTTGCATTGCATCCACTGAGCGGCTGTGTGGGGAGGGGAGGatggatttacacacacacccaggatGTTACAAACTTTGACGGCAACCATTTCTCAGCGCTTGTGTGATTATTGAGTATCTTACAAAGACGGGGCAGTCAATCAACTTATCGGTCAATTGTGACAAAGTGTCTGATACGAGGTGTCAAGACCTGAACTGCTGACAGCAATGACTCGATGCAGATCAAACAAACTAACTTTGTGGAGGGTGCGTTCAAGAACGCCACAACTCTGACACAAACTTGCACATTATTCCAGATATAAGAAATGTCACATAATCTGTTCTACCACGCCAACAACTAAAAACAAGCATTCTTCTGTGGAAATAaacatggtatatatatatactcttatTTCTCTTCCCGCTGTTAAAAAggcatgtgtgtttgtcagcTGTTCTTTGTCCGTATGATCGTTGTGAGGGGAGCGTTGTGGGGTCGTTGAATGCAGCCCTCTCTGGTAGGTTTTAGGCCCAGGCAGAGTGTTGCTTTCCTTTTACTTGGGAGGCCTGTAGGCGATCTTTCTGCTCTTCAGCACTGACCACCTGTGTCTCTTCATGTAATAGAGCAGAGGGATGATGATGCCGGAGCCCAACAGCAActtCAGTCCCATGCGTTTGCGTTGGTCGTGCTCTGGCTCGGCGGCCCACCTCAAGAACGTACAAACGTCTTTAGCGACCTGGCTCATGGTGGCGGGGGTTCCGTCCTCAAACTCCAATATCTCGTTGTAGATGGGCGGGGCCATGCCGATGGCCTGGCCAGGGAAGTATGGGTTGTAGTAGAGCTCCTCTCTCACCGTCACCCCCGCCGGAGGATCGCAGTATCCCGTCAGCAGGCTGAACACGTAGTCCTCTCCTCCATGTCTGGCATTGACAATGTAGCTGAGATCGGGAGGCAGCGCTCCGTTGTTGGCGACCCGGGCTGCCTCGGGGTTGGAGTAGGGCTTCGGGAAGTAGTCCGACAGCTTTCCTGGCCGGGTGAACATCTCTCCGCTCTCATCAGGACCATCCACCACCTCAAtCTCCTCAGCGATGGCCTTAACCTCTGCCTCTGTGTGCGACACTCCCACCAGGTTTCTGAAGGCCAGGTACTCCATACTGTGGCAGGCTGAACACACTTGCTTATACACCTGGTAACCACGGCGAATACTGCAGGGGCGGACCGAGCGAGAGACAAAGAAATCACAGAGACACTTAGTGTGAAACATTGCTGTCTTCCTCATACAAAGTGTAAGACGTG
>TU57438
CGCcactttattaaatatttacatGACAAAGCGCAGAAGCGGTTTTAACGCCTCAGACAGAAATGATCACGACACAGGCAGCATTTAAAAaaggtgttttgtgtgtataccGTCGTCTGATGCTAGAAACAAAACATAATGCCAAAGTTTCCTTTAAGATAATTTATTTTGTACAGTAAAACAGAGGTTCAGAGGTTGCATTGCATCCACTGAGCGGCTGTGTGGGGAGGGGAGGatggatttacacacacacccaggatGTTACAAACTTTGACGGCAACCATTTCTCAGCGCTTGTGTGATTATTGAGTATCTTACAAAGACGGGGCAGTCAATCAACTTATCGGTCAATTGTGACAAAGTGTCTGATACGAGGTGTCAAGACCTGAACTGCTGACAGCAATGACTCGATGCAGATCAAACAAACTAACTTTGTGGAGGGTGCGTTCAAGAACGCCACAACTCTGACACAAACTTGCACATTATTCCAGATATAAGAAATGTCACATAATCTGTTCTACCACGCCAACAACTAAAAACAAGCATTCTTCTGTGGAAATAaacatggtatatatatatactcttatTTCTCTTCCCGCTGTTAAAAAggcatgtgtgtttgtcagcTGTTCTTTGTCCGTATGATCGTTGTGAGGGGAGCGTTGTGGGGTCGTTGAATGCAGCCCTCTCTGGTAGGTTTTAGGCCCAGGCAGAggggtgggggagggggaggaaatCGCAACGTAGTATTGTGATATTTTCCatagcaatactgtatcgatacacggacaccaagtatcaatcttttattttatcaaTTGCACATGAAAATGTATCGTTTTGTTATTCGATTAATAAAATCGAATGCTTTTTCAGTCCACTAGAGGGTGCAGttgaagtgagatgaaaaaac

Function

NR:

description
PREDICTED: cytochrome c1, heme protein, mitochondrial-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU57437 True 1471 lncRNA 0.49 5 30095334 30098935
TU57438 False 913 lncRNA 0.41 2 30049077 30098935

Neighbor

gene id symbol gene type direction distance location
rpp14 rpp14,LOC102775666 coding downstream 4449 30037241 ~ 30044628 (-)
pxk NA coding downstream 14147 30000938 ~ 30034930 (-)
pdhb pdhb,LOC102799652 coding downstream 58584 29981169 ~ 29990493 (-)
kctd6a kctd6 coding downstream 80228 29928338 ~ 29968849 (-)
ccdc71 ccdc71,LOC100694780,LOC102196973 coding downstream 131630 29883718 ~ 29917447 (-)
LOC120556903 NA coding upstream 233098 30332033 ~ 30333751 (-)
ywhaba ywhab,LOC101154846,LOC103464293,LOC106947331,LOC102237816,LOC103143238,LOC107100836 coding upstream 347823 30446758 ~ 30474218 (-)
rims4 rims4 coding upstream 427033 30525968 ~ 30608052 (-)
LOC120557908 NA coding upstream 704446 30803381 ~ 30804569 (-)
LOC120557086 grip2,LOC106537019,LOC106530820,LOC103464302,LOC103143242,LOC103386517,LOC107691200 coding upstream 921837 31020772 ~ 31374048 (-)
G42692 NA non-coding downstream 41638 30006081 ~ 30007439 (-)
G42691 NA non-coding downstream 43157 30002658 ~ 30005920 (-)
G42689 NA non-coding downstream 51273 29997574 ~ 29997804 (-)
G42643 NA non-coding downstream 171234 29877510 ~ 29877843 (-)
LOC120557236 NA non-coding downstream 214628 29830967 ~ 29834449 (-)
G42743 NA non-coding upstream 39408 30138343 ~ 30139513 (-)
G42745 LOC103358868 non-coding upstream 97372 30196307 ~ 30204369 (-)
G42750 NA non-coding upstream 200384 30299319 ~ 30299611 (-)
G42773 NA non-coding upstream 242807 30341742 ~ 30342067 (-)
G42827 tomm34,LOC102784590 non-coding upstream 339562 30438497 ~ 30443211 (-)
LOC120556842 rpp14,LOC102775666,LOC101465350,LOC103374991 other downstream 11756 30036382 ~ 30037321 (-)
LOC120557442 hes5,LOC104956007 other downstream 1298844 28741798 ~ 28750233 (-)
G41944 NA other downstream 3155047 26778299 ~ 26894030 (-)
LOC120557963 grm4,LOC108231655,LOC100700221,LOC102289456,LOC104955002 other downstream 3565536 26324746 ~ 26483541 (-)
tspan2a tspan2 other downstream 4308971 25723968 ~ 25740106 (-)
romo1 romo1,LOC102788570 other upstream 26816 30125751 ~ 30130317 (-)
LOC120558045 NA other upstream 540036 30638971 ~ 30679082 (-)
LOC120557755 grip2,LOC103357845,LOC102782189 other upstream 847397 30946332 ~ 31015647 (-)
LOC120557401 blcap other upstream 2589085 32688020 ~ 32747110 (-)
podxl2 podxl2,LOC102777608 other upstream 2651857 32750792 ~ 32783836 (-)

Expression


Co-expression Network