ccdc71 (ccdc71,LOC100694780,LOC102196973)


Basic Information

Item Value
gene id ccdc71
gene name ccdc71,LOC100694780,LOC102196973
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 29883718 ~ 29917447 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039797283.1
ttatgtaattaaaaagaaaattgtgaCACCAGTAGGCTATAGGTTTCTTTGTTCTTAGAAATCAAGTAAACCGTCTGTTTTTGGTTAGTTTTGTTGACCTGTAATctccatggatgtataataataacTGCATACCTATCTCAAAATGGTGCCTGTTTAGTCCAACGGAGTTGCTGGCATGGCTCACACGGCAAAAAAGTTTCCAAGCTTCCGGGTTTACTTTTGTGATATGCGGCCCACTGAATATGCACAATAGTTTCTCTCCCGCTGGCCCCGTCCGCAAGTTCCTGCTCAGCCTATGGACTTTTTATTGTGGAACTCGAGGACTAGAAACATGGCTGGCGCTGCGCGAGGTCCCGTGGTTGGCCGGCCATTGGCATTTGCCAATGAAGAGCGAAGGGCGGTCCACTCCTGGTCCCGGATATCGTCAGCGGGGCACAACGTCCTCCTGGATGCTCTAAAGATCCTCAGCCCAATGTCCTGTGACCTCTCAAGCAGTGAGGAGCTGGTCACCTTCCTGCAGGAGCTGGGCGACGAGGGCCACAAGCCCACTGTGCTACGTAGCATGGACGTGTATGGCTACCGCTCCAGCACAAACCAACCCCTGACTGAAGACATGCTGAAGCCCCCCAACAGGAGCGCCAGACCTGCCGCCAAGAGGAGGGGAAGGAAGCCCCCGACCAAGAAGAGAGAGGTGCACCCATCCTGGAACACCTCTGAGAAGTGCAACCCTAAGATTCAAGGGGTCCGCCCTCCAGAGCTGCTGGTGGACCATCGTGCCATCACCTGCAGCAGGACACCCAGTAGGACTGTGGAGGTGTCGCAGGTGCGGCCGTGCCTCAGACTTACCAACATTGAGGGCCTGTCTGGCTTCCATACAGCCCGACTCCAGATTCACACTTCTTGGGACAAAACCTCTGAGGCACCATCTGTTGCCTTTTCAAAGCAACAGCACCCTCCAACGCTTTCAGGAATACCTTTGCAGCCTTCTCAGAACGGTGGTGGGGCGCCCACCAAAGCTGTGGCCTTGTTCAGCCAGAAGAGCCTGTCCTGCCCCATCCGATTGGACGGCGCCCTCATCGGAGATTCTGCACCGGTCTTTTACACAAATGGACGGGCATTCCCAGAGACTCCCACAGAGCTGACCAGCAATGGCTGGAGGGGAAACGGCCTCCACAGAGATTGTCGGGGCCCCAAGGAACTGAACAACCCGACCCGGCAGAGGAATGGCTGGAAGGACAAAAACGGTCTTAGAAGGAAAGTGATAAAGGTGGATGACTCTCGCTCTGTAGCTGAGGCCCGCAGAAAAGCGCAAAAGATCCTACAGGTCAACCTGTCTCCAGTGATTCAGATTCAACCTCTCAACCATGTGctgagagacttcagataccaGAATAagtgaacccccccccccattgttTCCCTTAGCAGATGTTAGTGTTTTACATCCATTAGCCTGTACCTGGCTGAGCCCCAGTGTTCATAGCAGACGtcttacattgttttttttgttaactcTGCTGAGTGTTgaggtcagtctgtctgtggaAGTTCTGGTTCCTGACAGGGGCACTCGGGATTGAAAGGCATTTGAAGTTAGGTGATGCTTTTTTCAGCAGGCAGGGAAAAGACTTGGCCGAATGCTGGTACATTTTCACAGTCCACTTTAGTTTACACTATACAATTCAACCAACCATCATTCTGCTTTAAGTTGACTGCCTGCTAGCCAGTGTTGCTGATGGATTTGGGACACAGCATCCACTGGGACTGGTTTGGTCAAAAGTGAATTTTCTGTCCTTCAACGAGGCACTGGGTCCTCCTCACAGTTGTTTAAAGAGTATGTATAACTCATTTGGAGTAGAGTGCCATTTTGTTAATTATTTTTACTTGTAGCGCTTAAAAACTGCTGTCACTCTGCAGCGCCCCATTTCCCCtgaaaagaaggagaaaatgAAGTTGGTGGTGGGACAGGACAATCACATTGAACGCCCAGATAAGCTGGTGGAAGAGCAGGGCAAGTTTCCAAAGTCTTTACAAGAGCAGACATGATGGTTGGTTGGTCCCAGCAAACAAATTAACTAAACAATTAAGAGaaaaatgtttagtttgtcttcctttttgtacttttgttgTTTCCACTGGAAATCAGGAAGGTTCTGGGGGCGAATATAGCAGGGAATCCAACCTGCAGCCCATACAGACAGATTGATACTTGGATgatttgtttgaactgcagTCCTTCACAAAGTGTTCCTTTTTTGGTTAAGTTTATCCACACATGGAGACAAAAAGACTTATAGAATATGTTTGACTGTTGGATGATTTGATGTCCTACAGAAACATGAATCCATGAACTGCAGAAAATGGCGACTATGGAAGAGGACTTGGGCCTACATCAAACAATTGGGTTTCTAAGATTCATCTTTAGATCTTAATTCTGGGAAAACATAAGAATTATGAGCTATAAGAATTCTGACTTCAATCTTTAAAGTTCTCTCACTGTTAAACTTCATCCCTGAATCCTATATTTACAAATTTCTGACTAATTTCAGAGTTTATTTTCCAAATTGCATCTTTTCCCCTCAAAATTCCTCCATTCCATGATGTGGCCCTGGTCCACCGCCATAAACACCAGATAACAAAAATAACCATCTGCTGTCGGTCTAATGCTGCTCAAGATTTACTtttgtcaaatacattttttttcttcacaggcAACCAACTGTCATTTGGAGCCTTGATGTAAGAAATTTGTTTGGCTGATTTAGAAATGTTTGTGGTGACATTTGTTAACTTAAACTGCAGGACTTTCTGTTTCCTGACCAGTTAAATTTGAAACTACAGCTTCAGAAAGTTTAATCTCCCATCAGAACTCTGTGCTCTGTTGAGTCGAAGGAAGAATTGCCCATCAAAATACTACTTGGTAGTTTCTTGATTTCTTGTGCTGTTATCAAACTGATGTGGCTCACCTTCAAACTAAAATAAATGCACTTTGAGAGTGTGACAGTGCTTAATTGTCGCCTGTTTCCTAAACATGAAGGTCGTTAATTTTCTTATTTCCTGTATCATGtagaaaatgtgaaataatctgaaaaatctggtttgacttttttttgaacccacactgttttttttgctaCAGGTGCTAACTTTGCAACGTTGGTGCTGAATTAAATAACTGGCACAAGAATGTCATCATATTCTGTTTTTCTAGTTCAATCACAGTAACTTCCTGTAAATTATTCTGAGGGATTTATAGCATTGCTGGCCCCTGCAGGTTGGGATGAGCTTGCCAAACCACCTTGTGTGTTTTCTAAAAGGTTTCTGCTGTGAGTTGCCACCTTAATTCATTTTCATGTCTGTAAAAAACTCCTGTGAATTTCCGTTTGCGACAAAACTACATTCCACAAGAGAAAAGTTGAGTGTTGACCTCGGAAACAATAATTCTACACAAAATCTTAACTCATAGTCCACTTAATAGCTTTTCCCCGGAACTTTTATTGATCTCACAAAGACCGTTAAATGTGAACGAAAGCTCTGGAAAAAGACCAAGTGAAACTTGATATTTTTTGTCAAAGTAtacttttaatttttctttttcttaaaaaaaaaaaggagaaaaaaagatcaaaaaTATTGACTTCCTAAAGTCCATGTAAAACCGAACTAAACCACCATCTGGTCAGTAAATGAGAACAAAAAAGATCTGTTTGCTGTGGACACTGTTATGGCTGTAGAAAGATCTAATCAGatttaaaatggaaatatgtGCTTACTGGTTTGGAGTCCATGCAGTATTCACGTATTAGCATTCTGTTCCCCTGTTTAATCTTAGACCACATCAGTGTTTGGTGGTCGGCTTTACAGATCTCCAAGTCCCTGTTCTGGTGAATTTTATGTTCCGATCTGTCTGTTCATGCCCACTGACAATTCCCTTTTCTATATCTTTGTTAGTCTTGTTTGTGCAACACTTGTATAATATTGTATTTCCTACATGAcctttgaaaacattttgttcAATAAAACCAATCTAAAAAGAA
>XM_039797284.1
ctctctccccggCTGCCTCCGCCTCTCTTCCCTGGTCTGTCATCCACACCGCTGTTGTTGCAGCCATTTTACTGTGAAGCGTCGGCACAGCGGCGACCGGAGGATGCCGAAACAGCGCCGTTAAAAGGACTAGAAACATGGCTGGCGCTGCGCGAGGTCCCGTGGTTGGCCGGCCATTGGCATTTGCCAATGAAGAGCGAAGGGCGGTCCACTCCTGGTCCCGGATATCGTCAGCGGGGCACAACGTCCTCCTGGATGCTCTAAAGATCCTCAGCCCAATGTCCTGTGACCTCTCAAGCAGTGAGGAGCTGGTCACCTTCCTGCAGGAGCTGGGCGACGAGGGCCACAAGCCCACTGTGCTACGTAGCATGGACGTGTATGGCTACCGCTCCAGCACAAACCAACCCCTGACTGAAGACATGCTGAAGCCCCCCAACAGGAGCGCCAGACCTGCCGCCAAGAGGAGGGGAAGGAAGCCCCCGACCAAGAAGAGAGAGGTGCACCCATCCTGGAACACCTCTGAGAAGTGCAACCCTAAGATTCAAGGGGTCCGCCCTCCAGAGCTGCTGGTGGACCATCGTGCCATCACCTGCAGCAGGACACCCAGTAGGACTGTGGAGGTGTCGCAGGTGCGGCCGTGCCTCAGACTTACCAACATTGAGGGCCTGTCTGGCTTCCATACAGCCCGACTCCAGATTCACACTTCTTGGGACAAAACCTCTGAGGCACCATCTGTTGCCTTTTCAAAGCAACAGCACCCTCCAACGCTTTCAGGAATACCTTTGCAGCCTTCTCAGAACGGTGGTGGGGCGCCCACCAAAGCTGTGGCCTTGTTCAGCCAGAAGAGCCTGTCCTGCCCCATCCGATTGGACGGCGCCCTCATCGGAGATTCTGCACCGGTCTTTTACACAAATGGACGGGCATTCCCAGAGACTCCCACAGAGCTGACCAGCAATGGCTGGAGGGGAAACGGCCTCCACAGAGATTGTCGGGGCCCCAAGGAACTGAACAACCCGACCCGGCAGAGGAATGGCTGGAAGGACAAAAACGGTCTTAGAAGGAAAGTGATAAAGGTGGATGACTCTCGCTCTGTAGCTGAGGCCCGCAGAAAAGCGCAAAAGATCCTACAGGTCAACCTGTCTCCAGTGATTCAGATTCAACCTCTCAACCATGTGctgagagacttcagataccaGAATAagtgaacccccccccccattgttTCCCTTAGCAGATGTTAGTGTTTTACATCCATTAGCCTGTACCTGGCTGAGCCCCAGTGTTCATAGCAGACGtcttacattgttttttttgttaactcTGCTGAGTGTTgaggtcagtctgtctgtggaAGTTCTGGTTCCTGACAGGGGCACTCGGGATTGAAAGGCATTTGAAGTTAGGTGATGCTTTTTTCAGCAGGCAGGGAAAAGACTTGGCCGAATGCTGGTACATTTTCACAGTCCACTTTAGTTTACACTATACAATTCAACCAACCATCATTCTGCTTTAAGTTGACTGCCTGCTAGCCAGTGTTGCTGATGGATTTGGGACACAGCATCCACTGGGACTGGTTTGGTCAAAAGTGAATTTTCTGTCCTTCAACGAGGCACTGGGTCCTCCTCACAGTTGTTTAAAGAGTATGTATAACTCATTTGGAGTAGAGTGCCATTTTGTTAATTATTTTTACTTGTAGCGCTTAAAAACTGCTGTCACTCTGCAGCGCCCCATTTCCCCtgaaaagaaggagaaaatgAAGTTGGTGGTGGGACAGGACAATCACATTGAACGCCCAGATAAGCTGGTGGAAGAGCAGGGCAAGTTTCCAAAGTCTTTACAAGAGCAGACATGATGGTTGGTTGGTCCCAGCAAACAAATTAACTAAACAATTAAGAGaaaaatgtttagtttgtcttcctttttgtacttttgttgTTTCCACTGGAAATCAGGAAGGTTCTGGGGGCGAATATAGCAGGGAATCCAACCTGCAGCCCATACAGACAGATTGATACTTGGATgatttgtttgaactgcagTCCTTCACAAAGTGTTCCTTTTTTGGTTAAGTTTATCCACACATGGAGACAAAAAGACTTATAGAATATGTTTGACTGTTGGATGATTTGATGTCCTACAGAAACATGAATCCATGAACTGCAGAAAATGGCGACTATGGAAGAGGACTTGGGCCTACATCAAACAATTGGGTTTCTAAGATTCATCTTTAGATCTTAATTCTGGGAAAACATAAGAATTATGAGCTATAAGAATTCTGACTTCAATCTTTAAAGTTCTCTCACTGTTAAACTTCATCCCTGAATCCTATATTTACAAATTTCTGACTAATTTCAGAGTTTATTTTCCAAATTGCATCTTTTCCCCTCAAAATTCCTCCATTCCATGATGTGGCCCTGGTCCACCGCCATAAACACCAGATAACAAAAATAACCATCTGCTGTCGGTCTAATGCTGCTCAAGATTTACTtttgtcaaatacattttttttcttcacaggcAACCAACTGTCATTTGGAGCCTTGATGTAAGAAATTTGTTTGGCTGATTTAGAAATGTTTGTGGTGACATTTGTTAACTTAAACTGCAGGACTTTCTGTTTCCTGACCAGTTAAATTTGAAACTACAGCTTCAGAAAGTTTAATCTCCCATCAGAACTCTGTGCTCTGTTGAGTCGAAGGAAGAATTGCCCATCAAAATACTACTTGGTAGTTTCTTGATTTCTTGTGCTGTTATCAAACTGATGTGGCTCACCTTCAAACTAAAATAAATGCACTTTGAGAGTGTGACAGTGCTTAATTGTCGCCTGTTTCCTAAACATGAAGGTCGTTAATTTTCTTATTTCCTGTATCATGtagaaaatgtgaaataatctgaaaaatctggtttgacttttttttgaacccacactgttttttttgctaCAGGTGCTAACTTTGCAACGTTGGTGCTGAATTAAATAACTGGCACAAGAATGTCATCATATTCTGTTTTTCTAGTTCAATCACAGTAACTTCCTGTAAATTATTCTGAGGGATTTATAGCATTGCTGGCCCCTGCAGGTTGGGATGAGCTTGCCAAACCACCTTGTGTGTTTTCTAAAAGGTTTCTGCTGTGAGTTGCCACCTTAATTCATTTTCATGTCTGTAAAAAACTCCTGTGAATTTCCGTTTGCGACAAAACTACATTCCACAAGAGAAAAGTTGAGTGTTGACCTCGGAAACAATAATTCTACACAAAATCTTAACTCATAGTCCACTTAATAGCTTTTCCCCGGAACTTTTATTGATCTCACAAAGACCGTTAAATGTGAACGAAAGCTCTGGAAAAAGACCAAGTGAAACTTGATATTTTTTGTCAAAGTAtacttttaatttttctttttcttaaaaaaaaaaaggagaaaaaaagatcaaaaaTATTGACTTCCTAAAGTCCATGTAAAACCGAACTAAACCACCATCTGGTCAGTAAATGAGAACAAAAAAGATCTGTTTGCTGTGGACACTGTTATGGCTGTAGAAAGATCTAATCAGatttaaaatggaaatatgtGCTTACTGGTTTGGAGTCCATGCAGTATTCACGTATTAGCATTCTGTTCCCCTGTTTAATCTTAGACCACATCAGTGTTTGGTGGTCGGCTTTACAGATCTCCAAGTCCCTGTTCTGGTGAATTTTATGTTCCGATCTGTCTGTTCATGCCCACTGACAATTCCCTTTTCTATATCTTTGTTAGTCTTGTTTGTGCAACACTTGTATAATATTGTATTTCCTACATGAcctttgaaaacattttgttcAATAAAACCAATCTAAAAAGAA

Function

symbol description
ccdc71 Orthologous to human CCDC71 (coiled-coil domain containing 71).

NR:

description
PREDICTED: coiled-coil domain-containing protein 71

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039797283.1 True 4040 mRNA 0.44 2 29883718 29916858
XM_039797284.1 False 3843 mRNA 0.44 2 29883718 29917447

Neighbor

gene id symbol gene type direction distance location
LOC120557234 NA coding downstream 139754 29741793 ~ 29743964 (-)
wu:fb55g09 NA coding downstream 213238 29668831 ~ 29670480 (-)
rbbp5 rbbp5,LOC102796613 coding downstream 255709 29616239 ~ 29628009 (-)
ippk ippk coding downstream 269598 29600807 ~ 29614120 (-)
ecm2 ecm2 coding downstream 292098 29569515 ~ 29591620 (-)
kctd6a kctd6 coding upstream 10891 29928338 ~ 29968849 (-)
pdhb pdhb,LOC102799652 coding upstream 63722 29981169 ~ 29990493 (-)
pxk NA coding upstream 83491 30000938 ~ 30034930 (-)
rpp14 rpp14,LOC102775666 coding upstream 119794 30037241 ~ 30044628 (-)
LOC120557999 abhd6 coding upstream 127604 30045051 ~ 30055038 (-)
G42643 NA non-coding downstream 5875 29877510 ~ 29877843 (-)
LOC120557236 NA non-coding downstream 49269 29830967 ~ 29834449 (-)
LOC120557237 NA non-coding downstream 81354 29798170 ~ 29802364 (-)
G42585 NA non-coding downstream 131662 29750229 ~ 29752056 (-)
G42502 NA non-coding downstream 484994 29398426 ~ 29398724 (-)
G42689 NA non-coding upstream 80127 29997574 ~ 29997804 (-)
G42691 NA non-coding upstream 85211 30002658 ~ 30005920 (-)
G42692 NA non-coding upstream 88634 30006081 ~ 30007439 (-)
G42717 LOC102788290,LOC105938248,LOC100694607,LOC103460371,LOC103023575,LOC107097993,LOC101480083 non-coding upstream 131630 30049077 ~ 30098935 (-)
G42743 NA non-coding upstream 220896 30138343 ~ 30139513 (-)
LOC120557442 hes5,LOC104956007 other downstream 1133485 28741798 ~ 28750233 (-)
G41944 NA other downstream 2989688 26778299 ~ 26894030 (-)
LOC120557963 grm4,LOC108231655,LOC100700221,LOC102289456,LOC104955002 other downstream 3400177 26324746 ~ 26483541 (-)
tspan2a tspan2 other downstream 4143612 25723968 ~ 25740106 (-)
ncoa5 NA other downstream 4525784 25310745 ~ 25357934 (-)
LOC120556842 rpp14,LOC102775666,LOC101465350,LOC103374991 other upstream 118935 30036382 ~ 30037321 (-)
romo1 romo1,LOC102788570 other upstream 208304 30125751 ~ 30130317 (-)
LOC120558045 NA other upstream 721524 30638971 ~ 30679082 (-)
LOC120557755 grip2,LOC103357845,LOC102782189 other upstream 1028885 30946332 ~ 31015647 (-)
LOC120557401 blcap other upstream 2770573 32688020 ~ 32747110 (-)

Expression


Co-expression Network