RNA id: TU57437


Basic Information

Item Value
RNA id TU57437
length 1471
lncRNA type inter_gene
GC content 0.49
exon number 5
gene id G42717
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 30049077 ~ 30098935 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGCcactttattaaatatttacatGACAAAGCGCAGAAGCGGTTTTAACGCCTCAGACAGAAATGATCACGACACAGGCAGCATTTAAAAaaggtgttttgtgtgtataccGTCGTCTGATGCTAGAAACAAAACATAATGCCAAAGTTTCCTTTAAGATAATTTATTTTGTACAGTAAAACAGAGGTTCAGAGGTTGCATTGCATCCACTGAGCGGCTGTGTGGGGAGGGGAGGatggatttacacacacacccaggatGTTACAAACTTTGACGGCAACCATTTCTCAGCGCTTGTGTGATTATTGAGTATCTTACAAAGACGGGGCAGTCAATCAACTTATCGGTCAATTGTGACAAAGTGTCTGATACGAGGTGTCAAGACCTGAACTGCTGACAGCAATGACTCGATGCAGATCAAACAAACTAACTTTGTGGAGGGTGCGTTCAAGAACGCCACAACTCTGACACAAACTTGCACATTATTCCAGATATAAGAAATGTCACATAATCTGTTCTACCACGCCAACAACTAAAAACAAGCATTCTTCTGTGGAAATAaacatggtatatatatatactcttatTTCTCTTCCCGCTGTTAAAAAggcatgtgtgtttgtcagcTGTTCTTTGTCCGTATGATCGTTGTGAGGGGAGCGTTGTGGGGTCGTTGAATGCAGCCCTCTCTGGTAGGTTTTAGGCCCAGGCAGAGTGTTGCTTTCCTTTTACTTGGGAGGCCTGTAGGCGATCTTTCTGCTCTTCAGCACTGACCACCTGTGTCTCTTCATGTAATAGAGCAGAGGGATGATGATGCCGGAGCCCAACAGCAActtCAGTCCCATGCGTTTGCGTTGGTCGTGCTCTGGCTCGGCGGCCCACCTCAAGAACGTACAAACGTCTTTAGCGACCTGGCTCATGGTGGCGGGGGTTCCGTCCTCAAACTCCAATATCTCGTTGTAGATGGGCGGGGCCATGCCGATGGCCTGGCCAGGGAAGTATGGGTTGTAGTAGAGCTCCTCTCTCACCGTCACCCCCGCCGGAGGATCGCAGTATCCCGTCAGCAGGCTGAACACGTAGTCCTCTCCTCCATGTCTGGCATTGACAATGTAGCTGAGATCGGGAGGCAGCGCTCCGTTGTTGGCGACCCGGGCTGCCTCGGGGTTGGAGTAGGGCTTCGGGAAGTAGTCCGACAGCTTTCCTGGCCGGGTGAACATCTCTCCGCTCTCATCAGGACCATCCACCACCTCAAtCTCCTCAGCGATGGCCTTAACCTCTGCCTCTGTGTGCGACACTCCCACCAGGTTTCTGAAGGCCAGGTACTCCATACTGTGGCAGGCTGAACACACTTGCTTATACACCTGGTAACCACGGCGAATACTGCAGGGGCGGACCGAGCGAGAGACAAAGAAATCACAGAGACACTTAGTGTGAAACATTGCTGTCTTCCTCATACAAAGTGTAAGACGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57415 lncRNA downstream 58445 30036382 ~ 30036889 (-) False LOC120556842
TU57416 lncRNA downstream 58528 30036382 ~ 30036806 (-) False LOC120556842
TU57405 lncRNA downstream 87895 30006081 ~ 30007439 (-) True G42692
TU57404 lncRNA downstream 89414 30002658 ~ 30005920 (-) True G42691
TU57402 lncRNA downstream 97530 29997574 ~ 29997804 (-) True G42689
TU57467 lncRNA upstream 39408 30138343 ~ 30139513 (-) True G42743
TU57469 lncRNA upstream 97372 30196307 ~ 30204369 (-) True G42745
TU57476 lncRNA upstream 200384 30299319 ~ 30299611 (-) True G42750
TU57501 lncRNA upstream 242807 30341742 ~ 30342067 (-) True G42773
TU57571 lncRNA upstream 339562 30438497 ~ 30443211 (-) True G42827
XM_039796543.1 mRNA downstream 11463 30064169 ~ 30083871 (-) False lmcd1
XM_039796544.1 mRNA downstream 11463 30064169 ~ 30083871 (-) False lmcd1
XM_039796542.1 mRNA downstream 11463 30064169 ~ 30083871 (-) True lmcd1
XM_039798769.1 mRNA downstream 40296 30045051 ~ 30055038 (-) True LOC120557999
XM_039798770.1 mRNA downstream 50706 30037241 ~ 30044628 (-) True rpp14
XM_039798050.1 mRNA upstream 26816 30125751 ~ 30130317 (-) True romo1
XM_039796729.1 mRNA upstream 233098 30332033 ~ 30333751 (-) True LOC120556903
XM_039796715.1 mRNA upstream 347823 30446758 ~ 30474218 (-) True ywhaba
XM_039797918.1 mRNA upstream 427033 30525968 ~ 30608052 (-) True rims4
XM_039798606.1 mRNA upstream 704446 30803381 ~ 30804569 (-) True LOC120557908
XR_005638968.1 other downstream 1345101 28741798 ~ 28750233 (-) False LOC120557442
unassigned_transcript_204 other downstream 2521607 27573656 ~ 27573727 (-) True trnap-agg_2
TU56437 other downstream 3201304 26813208 ~ 26894030 (-) False G41944
TU56362 other downstream 3754142 26324917 ~ 26341192 (-) False LOC120557963
unassigned_transcript_203 other downstream 4569133 25526120 ~ 25526201 (-) True trnas-uga
TU57462 other upstream 26826 30125761 ~ 30130281 (-) False romo1
TU57583 other upstream 540036 30638971 ~ 30679015 (-) False LOC120558045
XR_005639084.1 other upstream 1287666 31386601 ~ 31386657 (-) True LOC120558256
XR_005639085.1 other upstream 1293641 31392576 ~ 31392632 (-) True LOC120558257
XR_005639072.1 other upstream 1297327 31396262 ~ 31396318 (-) True LOC120558242

Expression Profile