RNA id: XM_039796715.1


Basic Information

Item Value
RNA id XM_039796715.1
length 4283
RNA type mRNA
GC content 0.46
exon number 7
gene id ywhaba
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 30446758 ~ 30474218 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATACTGgcggggggaggggtggggtttAGAGGAAGCGGAAGTGTCAGAGCAGGCGGAAGTGGTACTGCCCTGAATACCCTGAGCAGCGAGCGGAGGACGGCTTGATTAACTCCCATCGTTCAGAGACTAAAATCGGGATTTCTAGTACGCTCTAAATCCTCAAAATGGATAAGAACGACCTGGTGCAGAAAGCCAAGCTGGCCGAGCAGGCCGAGCGCTACGACGACATGGCGGCTGCCATGAAGGCCGTGACGGAGCAGGGCCTGGAGCTCAGCAACGAGGAGCGCAACCTGCTCTCTGTCGCCTACAAGAACGTGGTGGGGGCCCGCCGCTCATCCTGGCGCGTCATCTCCAGCATCGAGCAGAAGACGGAGGGGAACGAGAAGAAACAGCAGATGGCCCGCGAATACCGTATGAAGATCGAGGCTGAACTCCAAGAAATCTGCCACGACGTGCTGAATCTGCTCGACAAATTCCTCATTCCCAACGCATCTCAGGCGGAGAGCAAGGTGTTCTACCTCAAAATGAAAGGAGACTACTTCAGATACCTGTCGGAGGTGGCCTCTGGGGACTCAAAGaaggacACGGTGGACAGCTCTCAGCAGGCCTACCAGAAAGCCTTCGACATCAGCAAGAAGGACATGCAGCCAACACACCCCATCCGGCTGGGCCTGGCCCTCAACTTCTCCGTCTTCTACTACGAAATCCTCAACTCGCCCGAGCAGGCCTGCACTCTGGCCAAGCAGGCTTTCGACGAGGCGATCGCCGAGCTCGACACCTTGAACGAGGACTCGTACAAAGACAGCACGCTGATCATGCAGCTACTAAGGGACAACCTCACTCTGTGGACATCAGAAAACCAGGGCGACGAGGGCGAAGCCGGTGATGGGGAGAACTAGAGCGCACTTCACTGTTAACCCATCCccactctcttcctcctcctcctcctttgatctctcttcctctctcttcttccctGTCTTcgtacacataaaaaaaaacagcccgtTCATTCCCCCTCGTCCCACTTTTTTTCAAGCCCAGCCTCCCAACCTCCCTTCTGTATAACCAACAGCATGAATAGTACCTGACCTTCACAGAcagatgggggtgggggggaaaaaaagaggaggggggggggcggcgAGAGAAAGTACTCCATCACCCCGcgatccctccatccatccctccctccctccccttgaTCACGGCACTCCGAGGCAGGCCAGCAGCCTAAATGCACTGGTCAGTGTAGTCTTTTAGCACGCAGGGAGGGTTTTTATCccaaaactacaaaataaaGCGTCTTTTAGGGCCcccacttattttttttttaatctccctCCTCCATTCCTTCTGCTCTTCCCTCACTCCTCTTCCTGACATCTTCCTAACCCCCCCACCACCCTCTAGTGAGTTAATGCACATACATAGttgtccactctctctccccccccttcccctccctcGCTCTATTGAGTTTAATGCACTTCTCTAGTTGTCCACCCCTTCTCTTTTGGCTTTTCTTAGTGTACTGGCAAATGGCCGGTTTTATTCCactttaaacaaaacaacaacgaAAGGTTATTAAACTGTCTGTTTATTTTCAACAAACACTGTGATGCTTAGTTTTTCCTCCACCTCGCCCGCCAGATCCTGGTTTTGGTGGCGAGAACAATATTCAgctgggagggggaggggggcagcAGTGCGATTCTGCTGACGTTTATACAGAAGGGTCCTCCTACAAGGCTGTATTGTGACACTGACAAATCTTAAAAACCAgagcgtttttattttattttttttacctgctgtgtaatcaaacaccttttttttttctttattttattttctaactCCGACCTGGAGTTTTATTCAACTGGCGTTCTTTACAGTTCGGACCTAAAACTAATTTGGGAACTTattgagaggaaaaaaaaagcatacattCCATCATGACGTTTTCACAACCAACGAGACGCGCCTGCTCCCTCGGATGGGCCTCCAGTCCGACATCAGCAACCCTGTCCCTAAAGTTAATTCCCTAACATGTTCGTTTCCCCTTGAGAttgctttttcctttttttgttgttgtgtataACAACTCTTTACTTCCAGtttttgaaaactgtaaaatTGTAAAACATTTTTAGAGCTCAACTGtaaatctgtcttttttttttgtttgtttttttggggaaaaCAAAGCGGTTTGTCGTTGTTGTTCGTTAACACCTGCTTGCAATGAAAACCTTGAAGCCGTTACGCTCGGCTGCCGTTTAATgcttgggcttttttttttggtactttattttctcttcCTCGGCCCCTTATATAGCCCCTTGATTGACAAGTCTACAAAAAGTCCTAGGCTTCCACTCGCTGAATGGGTCCATCTGCCAACAAGAAGGCATGCCATCCTTTATAGCCGTGGAAGTCCTCCCGCAAGAATGGAGTGGGGGAACTTGTACCCTCTGTGGATCGACGCTTAAAACTTCCTGCTTCCTCGTTTTCCAAAATATGAATGGCAGTCGTGGCAGTTGGCCACATTTTAtttcctactatggccacgccaagacccgcccttcaatagcagcccgattggttgaggtcaggcattgacctcgagtggttaaggttaggatagccaatAGGTCGGAGGATGGGACCTGTATTAATTGGGGCTACGTTGCCTCACATAAGCATGGCCGCCTGGCCACCagtagcgtgtgaatgctattgaagggctgGCAGTTAGGCCTGCCGTTATTCCTTCGAAGATGTTCAAGATTGGAGTATCAGCTAACTGCCTTAAAAAACCAAAAGTTGAGTTGAGCTTCAGAGTTCAATAATGATCTTGAAAACaggcaaaaaacaaaatatttttcctTTCTGATTAATAACTATAAGAAAGGTGTAACCAAATCCAACATTTTTATTCAGTACTTAGTGTTAAGTCGGGGCCTTTCTTTTTAGGCTTAACCCAGCTGACTTGtttaaatgtaacatttcaaatcacagaaaaacaaaacaaaggaagCAGTGATTTTAAGtgcccccccccactccccacCTTGGTGTAAATTTCAGTCCAAGACCGGTACGTGAGTGGAAGGAAACCCAATCTCCCGGCAGCCGATCATCTGTTTGTGGAAGTGAGAACCTGTAGTTTGGATCACGGTTAATGtgttcggtaacactttactacgtaagagtgacatgacactgtcatgaacacatgaaccctgactcgaacttgtcatgacaaaaaccaaatgacagaCGCATTATGTCAAACGTTTGACttctttataatgtttatgacccGTTCATGACCacgtcatgtcactcttatgtagatcccttcaagtaaagtgtaaccatgTATTCAAGCTAGAGTTTATAAACATGCATAAATGTCAtggcaaccttttttttttttttaaattatcttTTTGACCGCGTGTAGAAGAGAGAACACTCGCTGAGCAGTCGACGGTACAAAATCCCGGCTCATTTCCAGATCCGATCTTTTCCGATGTGTACATTTTGGACTCCTTGTGGTTTCTCTTGTTTAGGCGACTGCGCCCCCTGCCCATAGCGAGGTACTGTACGTGTCCAGAAGCAGTTGAGAGCTAAACTTTGGTTCCAAAACCCGCGAGTCCGATCCACTCAGTGTCACAATAACCTTGTCACCATCTCAACATTCCACCCTTTTTAGGTGTAGAAAAGTCATGTctcaatgtttgtttttcttttgctgggGACAAATGTTTTCATGCACTGAAGtctaaaaggttaaaaaaaaaaaaaaatattcttccCTGCCGCTCTTTTTCTCGTTAGCTGAACAAAAAGGCAGTTATTCTACGCTTTATaaggacaaaaaataaataaaagatccCATGCAGTAGTGAATGTGGCACCGAGCCTGTCTGTATATCTGGTATCTCAAATCGTTTTGTTTTTACTGACCAGTATTAtgcttaaaataaaaaggaaaggaaaaaaataccACCCctgccccacccccccccccccacaaaaaaaaaagtttgcttcTGTGACGGTTTTATTGCTTAGTGCGCACGTGGTTGTGAAAATTTAGACTTAGCTTAAGGACACCAATAAAactaagaaaaagaagaaaaaaaaaaaaatacccttCAACaccttcctcccccccccccctccccctcctggTTATTGAAGTAATACTAGATTTGTgtatgtcttttaaaaaaaaaataaaaaaaaaatccaactcTAGTTTCACCTTA

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component
GO:0019904 protein domain specific binding molecular_function

KEGG:

id description
K16197 YWHAB_Q_Z; 14-3-3 protein beta/theta/zeta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57571 lncRNA downstream 3547 30438497 ~ 30443211 (-) True G42827
TU57501 lncRNA downstream 104691 30341742 ~ 30342067 (-) True G42773
TU57476 lncRNA downstream 147147 30299319 ~ 30299611 (-) True G42750
TU57469 lncRNA downstream 242389 30196307 ~ 30204369 (-) True G42745
TU57467 lncRNA downstream 307245 30138343 ~ 30139513 (-) True G42743
TU57573 lncRNA upstream 44047 30518265 ~ 30524202 (-) True G42829
TU57584 lncRNA upstream 199666 30673884 ~ 30679015 (-) True LOC120558045
XR_005639048.1 lncRNA upstream 202690 30676908 ~ 30679082 (-) False LOC120558045
XR_005638886.1 lncRNA upstream 301770 30775988 ~ 30777731 (-) True LOC120556693
TU57628 lncRNA upstream 339098 30813316 ~ 30813651 (-) True G42875
XM_039796729.1 mRNA downstream 113007 30332033 ~ 30333751 (-) True LOC120556903
XM_039798050.1 mRNA downstream 316441 30125751 ~ 30130317 (-) True romo1
XM_039796543.1 mRNA downstream 362887 30064169 ~ 30083871 (-) False lmcd1
XM_039796544.1 mRNA downstream 362887 30064169 ~ 30083871 (-) False lmcd1
XM_039796542.1 mRNA downstream 362887 30064169 ~ 30083871 (-) True lmcd1
XM_039797918.1 mRNA upstream 51750 30525968 ~ 30608052 (-) True rims4
XM_039798606.1 mRNA upstream 329163 30803381 ~ 30804569 (-) True LOC120557908
XM_039798347.1 mRNA upstream 472114 30946332 ~ 31015647 (-) True LOC120557755
XM_039798349.1 mRNA upstream 472114 30946332 ~ 31015647 (-) False LOC120557755
XM_039797121.1 mRNA upstream 546554 31020772 ~ 31374048 (-) True LOC120557086
TU57462 other downstream 316477 30125761 ~ 30130281 (-) False romo1
XR_005638968.1 other downstream 1696525 28741798 ~ 28750233 (-) False LOC120557442
unassigned_transcript_204 other downstream 2873031 27573656 ~ 27573727 (-) True trnap-agg_2
TU56437 other downstream 3552728 26813208 ~ 26894030 (-) False G41944
TU56362 other downstream 4105566 26324917 ~ 26341192 (-) False LOC120557963
TU57583 other upstream 164753 30638971 ~ 30679015 (-) False LOC120558045
XR_005639084.1 other upstream 912383 31386601 ~ 31386657 (-) True LOC120558256
XR_005639085.1 other upstream 918358 31392576 ~ 31392632 (-) True LOC120558257
XR_005639072.1 other upstream 922044 31396262 ~ 31396318 (-) True LOC120558242
XR_005639073.1 other upstream 923978 31398196 ~ 31398252 (-) True LOC120558244

Expression Profile