RNA id: XM_039798347.1


Basic Information

Item Value
RNA id XM_039798347.1
length 9603
RNA type mRNA
GC content 0.44
exon number 21
gene id LOC120557755
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 30946332 ~ 31015647 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctcaaaGCACCAGACAGCACCTCAGGGGTTATATCAAAGACAATCGACATCTGTTTGCACAAAGAGGGGAACAGCTTTGGTTTCGTCATGAGAGGCGGTATCCACGAGGACTGGCACAAGTCCCGCCCCCTAGTGGTCACCTACGTCAGGCCGGGAGGTCCTGCAGACAGAGAGGGGACACTGCGTCCCGGGGACCGTCTCCTTAGTGTGGATGGCGTGCCGCTGCACAACACCAACCACAGCGACGCGCTCAGTGTGTTGGCTCAGTGTGGCCAGGAAGCCCTGTTCCAGATAGAGTATGACGTCACCATCATGGACACCGTGACAAACGCCTCCGGCCCGCTTTTAGTGGAAATCGCCAAGGCGCCCGGAGCAACGCTGGGTATCACGCTGACATCGGCCAATCATCGAAACAAGCAGGTCATTGTCATCGACCGGGTTAAACCTGGCAGCGTGGtggacagATGTGGAGCATTGCATGCTGGGGATCACCTGCTGTCCATAGATGGCACATCGACAGAACACTGTACAGTCCTGGAGGCAACACAGCTATTAGCGAGCACAACAGAACTGGTGAAATTAGAAATACTCCCCTCCCATCAAACAAGGCTAACTGGGAAACAGCACGACACAGTGAAGGTTCAGAAGTCGGACCACCCCCACTCCTGGGACCCCTGTGTGAACTACTGTCACCCTTCAAACTCCACCCTCTGCAACACAAGCGCCACCCTCAACAAGTCGTGGACCGCCTCGAATAACAACACCATCAACCTTGACTACTGCAAGTCTCTGGTATCTGCCAGTTTCTCTCCCAGCTCTACCACTACATCTGGACCCAGTAGCCAGAGCTCCAGCACCCTGCCCAGGCCTACAGTTCCCATGAGCCCACGTAACTCGCTGCTCAAACGAcggcagagaaagaaagagcacAAAAGCTCCTTGTCTCTGGCGTCCAGTTCGGTGGGTCCGGGTGGTCAAGTGGTCCATGTAGAGACCAGTGAGGTCGTCCTAACAGGCGACCCACTCAACGGCTTCGGTGTCCAGCTGCAGGGAGGCATATTCGCCACCGAAACGTTGTCCGCACCCCCACTTATCCGATTCATAGAGCCCGACAGCTCTGCAGAGAGGTGTGGCCTGCTGCAGGTTGGAGACCGCCTCCTGTCAATCAATGGAATCCCCACAGAAGACGGAACACTAGAGGAGGCCAATCAGCTTCTCCGAGACGCGGCGCTGACCAATAAGGTCACACTGGAGATAGAATTCGATGTAGCAGAGTCAGTGGTGCCTAGTAGTGGTACGTTCCACGTCAAACTGCCGAAGAAAAGAGGAGTGGAACTGGGGCTCACCATCAGtgCCAGTAAGAAGCCAGAAGAGCCCCTCATCATTTCTGACATCAAGAAGGGCAGCATGGCCCACAGAACAGGAACACTGGAGCCCGGTGATAAGCTGTTGGCCATCGACAACATCCGACTGGAGAACTGCTCTAAGGAGGATGCCGAGCAGATCCTGCAGCAGTGTGAGGAACTGGTCAAACTAAAGATACGCAAAGACGAAGACAACTcagATGAGCAGGAGACGTCAGGCAGCATCATCTACACAGTGGAGCTGAAGCGGTACGGAGGCCCTCTGGGTATCACCATCTCAGGCACCGAGGAGCCTTTTGACCCCATCACTATATCCGGCCTAACAAAGAGAGGCCTTGCCGAGAGGACAGGGGCTATTCATGTAGGTGATCGGATCCTGGCTATCAACAGCGTCAGTTTAAAAGGCAAACCCCTGAGTGAAGCGATCCACCTGCTGCAGATGGCTGGGGAGACGGTCACCCTCAAGATAAAGAAACAGCTTGATAatggagaggagaggaaggcaGCAGATGCAGAGGACACCACAGAGAATGAGCTCAGTGACCCGGAGGAGGATGATTTGACGGACAGCCAACAGACCAATAAGCTGTCAGAGCTTTATTCCACAACCATACCCAGCGTCGACTCTGCCATGGAGTCGTGGGATGGCTCAGGGATGGACGCCGGCTATGGCAGCCAGGGTACATACAGCCACCAGGCAGCTGGTATCGCCCTGCACCCCCATGAGTGGCGTAGTGCCAAGCAGCAGCGCAGCACGACGCCTCCTCCTGGACGCCGGAAGAACTACCCATTCAGTGACGGAGGATTCAGTGAGGACGACTGGGACAAACCACCTGGATTTATCGGCCAACCACCAGACGGTATTCTGTTGGATCCAGATGACAGTTTCTGGTGTCAGGCACTTGAGGATCTGGAGACATGCGGCCAATCAGAACTACTCAGAGAGATAGAGGCATCCATTATGACAGGAACAGCCATCAGTCTGGGTGTAGACGGCATCAACAAGCCTCCAGCTGAGCCCATACTGAGTCACACCAGGATGAGCCCGTTGCGGAGAAATTCTCTCCTGCACCAGGGAAACCTGCACCACCAGGGTACGCACCTCCACCAGGGCGCCCATCTGCACGAGGAGGGCCACCTGCACGAAGAGGCCCAACTCCACCAAGCCCACCTGTTCCAGGAGGCCCATTTCAACCACGAGGCCCACCTGCACCAGGGTTCCCACAACCACCAAGACAACCATTCCCCTCTCCTGCACCACGAGCCCAAGCCGAAGGCCTCACTGCGAGTGTCAGAGAGGACGTGGGAGTCTCGTCGGATCAAAGAGGAGATGCAGGGGATTCTGTCCCCAACGCCTTTGGAGCTGCACAAAGTAACGGTGGTAAAGGACCCAGAGATCGACGACTTTGGCTTCAGCGTGTCCGACGGCTTCTTGGAGAAAGGAGTTTACGTCAACATGATCAGACCTGACGGACCAGCTGACCGAGCCGGGCTCAAACCCTACGACAGGATCCTGCAGGTGAACCACGTGAGGACGAGGGACTTTGACTGCTGCCTGGCGGTGCCTCTGATCACAGAGGCTGGGGACAGACTGGAGCTGGTCATCAGTCGCAACCCACTGGCaaacgacgacgacgacgacgacacAGAGGACAATAACAACACTTTAGACCACCCGCTGGACCTGTAAcacagacaaaaagacagagcgaatgcatgtgtgtgtgtatgtctaccGATGTATCTGTCAGTCAAACTCAGGCAGATGACATACTCTAACTGGTGATGAGGCGCAAAGTTATATCTACTGGAACTGGCCCaaacgcacaacacacacaaacgcacgtcACCGGCTTGCAACAATTCTACTTAAACACAGAGACTCcttgaggcacacacacacacttgcatgctTACACATTCACCCCTTCCCATTCACACTGGGTTGAACTGCTGTCATACAGTATAATCCGCGATGAAATCACTGGCACCGTGCAGAGAAACCACCAGAGACGCTCTCCTGAAGGCTGGCTTTGAGTCCTCGCAGTGTTGTTCCAACGTGAACCGCTTACTTGGCCCTTTAACCAGCCCATAACTGATTCTGACTctttaaatattgtttttacttaaaacaaatgaataaaacCCTGCAATTTGGGTTAGGTAATTTCAGCAGTTTTTAATGCCAGGCCACAGGTTTATAGAAATGTCTAGTGCTAATGTTGCCAGAGGGATCTGCCTTATTACACAATATTGTAAGTGATTCTAGTAAATTTCAAGTAAAACCTTATTGATAAAAGAGAGGAAATGCCTTGCTCAGTTTGCAGATTCCATTTGTTTTAAGAAAGGCCCTCAACACTCACTAGACGATGGGACCAACAGTTTATAAAGGAATTGTGTCGGACTGTGGTTGTATGCATAAAGGTGGACTTCTATGTTGGATACGTCTGCACATTTATTGCAGACGTTATTATTACTGCACAGTTATTAGTGAATTAGCACAGATTATTGTGGAATTTGTGCCATCATTACACGTTCAAGACGTGGATGTTATCACAACTgccaaacagttttttttccaatcatcaaagagaagaaaaagaagggaaGGATTGCTTTCCTTTCGCGTCTTGAAAGGATTGATGAGCAAAGGCAACTTTTGCTGCAACACAGTTGGACAGCTGTGCTCGTGGAGATGCCTCAGAGTAAACTGTGATTCCAACAGAAAAACAATTTTCCTGCAACCTTCTGAGAGATTACTGACCCTTTTCCGGGTTTTCGTTTgggttgtggtttttatttgcaAATTGCTGGGAGAGTTCCCAATCGGTCCCTAGAGTTGACTTAGAGCACTGGGTTCATCTCACCTCAGCTCATTGCTGGCCTACAAAGTTGAAGAGCAGTAGCTAAATAGCAGGGCTCATGATGATGGTTGAGGTTCACAATAATCAGAAATAACATATGTAGACCGTTAAAAGGTGCTGCGCGAAGTACCACATATATTTTGAAACCGTAGTATAATTGCCATAAACAAACAAGGTGAAGGAGCCTGTCGCAGCATCCAAACTGTATTTTACACTGTGAGCCAGTGCAAGCTTTTTAGGATAATTGCTTTGCACAAAACAGGAATGAAGCAATGTTCTTCAACAACAAACACAGCTACAATAAAGCCTGTGAGTTCAAACAAATGGTAGATTAAATGTAAGGCCTGTGGGAACATAGTTATCCAACATGGTTTATCTTCACAGTAAACAGACAAAAGGGTCAATTTGTAATTTCCACTGGTATGAATCAAAATTCGCCCGGGGAGTTAATACTTAAGTCCCGTGCTGACTCAGCATAACTAAAGAGTCAGACATACACTGACACATGACACTCTTTTTGCAAGATGTGATTTAGTATTAATGCTTAACACTCCTTGTTCTCATAATTTAAGGCTCCACCATATTGCTGCTCATTTATGGATTGTAAAATATACAAGCATAGCGAAGCATGTTTGGCGGTATTAGGTGTATATTATTCTTTGACTTGATTCATAAATAGGTAGCTAGCTCGACATATGCTGCCTACTGTATGTCAAGAAGAAAAGAGTGAACAAAAGTCAAAAACAAGCAACACCGGTTCACAAGCAATACAGTcgtaaagcaacactatgtaacttttcccgcttcggtccccctacaggttgtctcattggaactacagctcgcgctacccgccgcttcggtccccctacaggttgtctcattggaactgcagctaaaagttacatagtgtttctttaagttgcaaaaaaaaaaaaaaatccaagtaTCAACAGTACCACTGTTTAGGAATAGATGCTACTAATCAGTCCACCACACAGTCTCGTTTATAACCAGCTATGGCAACAATTTTGACAACTGATGTTTAAAATGCTCCACATAGGACCTTCAAATGATGTCTACCGTATATAAAGTGTTACTGCTGTTTGGCTTTGTAGGGaagacaaaatacttttgcaaacaaatataACAGCATTGTCTGCAAACATAGAAATTGAATTTGTCAGGATGCTGAGGGTAGCAGGCTGTTCAGAATAggaacaggacacacacacacacacacacacacacacacacactcactctcagaACAGGGCCAGCATGCACAGATAACATAAGGACATGACACAATGCAGTTTGTGTTTGACTTGTTCATgactttgttcatgtttctgtgtgttcgGCTGTGTTGTATTGCATCTCTGTTTCTAATGTGCATGTACGTGAGTGTGCCAGTGCATTTCTATCTTTGTGGGTGTATCTGAAAGGGTGCATATACAGGGTGCAACTGAAACTGCTCAATTCTCATAGTAGCTTTGGCTGAACTTTCGAATGCATTTTGCACAGAAGCTGTGGCCTATCTCTTCCAAACTATAGGTTTATGCAGTGCCCACCACGTTTAATTACTTAAACTTTGCTTCTCAGAAATAATGTTTTATCTGTTTATCTGGTGGAGGGCTCTTAATATTAAATGATAATACCCATGAGATTTGGCTGCCATTGCTTTGGAGACAAAGCCAGTCACAGGTGCTAATTAGAGCTGTAGGGAATTCAAAATACTTTATCAGTGcaattgaaaacaaaatactgtgTCGTAGTTGCTGATATCATCCAAAATTGTGAAAATTCAAAAGTGAATTGATTTTAGCTGCAGATTGTATTTTTAATCCTCTAAACAGCATAATCTTTAGCTTCCAACAACCGTTAGCAGTGCAAGTAACAGATTTTTAATCTGTGGTTGAATGTTTGCACTATAATGCAccaatgggacctttaaatcaaaGAACCAGATATTTCATGCTAAGAAGTAGTAGtactatataataaaaataatgattaaACAACAAGAAAATGTATCACATTTGTGACCCTCAAAAAGTGTGCCAACTGTCAGTGCGCCTAAAATAGCTCCACTCACTTTACAACTCTGTCTTACTACAAAAATACCCCCATGCCAAACTCAAAGAAATCTGAACCTTTCATTTATTGACTTCTCTTTTCACCCTCCCACCTCTCCTCACTGCCTATTTTTGGTCTGTTTGGCAACCGGAAAGATTCATTCCACTTCCTGTCTTCATGATTTTCTCTTATCCCTGACAAAACTGTCTTTGCCCTTATTTTCTTTGCATTAACAGAAATGTGATTGGCTGTCGCTCCCCTCCAACTGCACAcggctgtgtgtatgtgcgtttgGCAGAGATGAATTATATACATGTGTACAGTGTATACGGGTTGCCTGGGATATAACATTTCATACATGTGTTCCTGTGTATATGTAAGTACGTAAGCACAATAGAGAGAACCAATACTGTGTGAGTgtatgaaataaaaagaaacagaggAATACTGcatgtgagaatgtgtgtgagtgtgtgaaagGGAGGAGACAGAATAGCCTTTGTGCTCTGAAGGATTGGAAAATGTTTCGACAGGAACAATCACaacctctgttctctctctttcactgttTGCATGTCTCCCactctttcttcattttgttaCATAATACAGTAAGAATCCAGCTGCCCCCTTTGAGAtcacccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtgggggggggggctatcgGTATGTGTGCCTCTTTGTGTACTATATAATTTTGTTTACATGTACGTATCCAAGGATGTcaggtttttcttttccttttaagCATGTATGAGCTTTTGAgcatgcattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaagagagagagagacagagagctagGTGGTGTACATTTCATTGTACAGTGGTGATATTTTTCAGGGTTGTGGGCCGTTCCAAAACCCTGATGAGAGTGAAAACAGTATAAACTCAGTTTTTGTGAGCGAGCCGGAGGAAGtcaacttttttcaaaaataacaaaaaaatggaCATTTACTTCTCTCCGAGCATTtactacaaaaaaaagaagcacacTGTTGAATACCATGCACTGTAAGCATTTTCATGTACAATGGAACAAACTTGTCTGAGTGTTTTTTACCCAATgtcaagtggccaaaaaaaaaaaaaaattgttttgtatagtaacgaaggaaaaaaaagacaacatgcTGAGAAAAGCCTTCCAAATTGTTCTGTTGGTTTTTATGTATGTACGTACGGTATGTGTGGTCATCCATACTCCCTATGCATTTCTgggtcaaaggtcagtttaaagcCCAATCCGGAATCGTAACAAAAGTCCCACAGAGGAGTGAAGTTTAtaagaaaatataaaactgtatcACAGTTATATGATTGTTAcgatgtaaaaaaaatgacacatttaCAGATAAGTGGTTGGAAAtgtgaaaatgacaaaacattCAATCACTGCGACAATGTAGGACTGCTTTGGAAATCAtttaattcaaattcaaattaatAATACAGATTATTGAGTCACTCATTTTTGAATTTTGGGGGAGAAATGTCACAATGTCAGTCTGAAGATTTGCCCCTGAACCTGTTAATAGATGTCATTACATTGACACATTGTTATATAATCTGACATTTATTACAGTACCAAATCAGCTGCAGTACATGCCCGCCTCcttaaacacacactgacacacaataGATTGTGTTTCTATGGTTCATCTTAACCTGAAGCTTCAACAGAGCCCAGTTTCTGAACAAGAGGATGGTAGTTCAAAATCCCTTTGCCAGGATGGAAGCCAGGCTGGGGGAGAAGACGGATTTAGCAGCAGGGCCATAACTGTGTGTTTCTTGAACAAGTTCCTGTTGGAGTTCGAGCACGTGTTGGAGTTATTACTgcagtttttgttattgtgcaATGGAAGGCAGTCATTCTTTCAGCGTTTGAATTTGGAGACacgttgaagaaaaaaaaaagatcactgCTTACTGTTTCTGTCAAGTTGCAGATTTCTGTTTGTACTGTTTGAGAAAAAAGTAGActttcagttttgttttttttaccatgcaGCGGCAGCGCATACTGGAGGTTCTCAGCCGCTAGCTAACAGTTGCAAAAGCTGATTTAATGTAGCTGTGCACAGCTTTACGTAACAGAGTTCAGACATGGCTTTTGTATTTGACTAGCTGATTATTTAATTAGATTTAGCATGTTttctaaaacaaacaaacacagtatCTGTTAAATTAACCATTAGAAAACTATAGCTAACAATTATTAATGGTTAGCTAAATATTAGCATACTGCCTGATAATTTTTGCATTATTTCCCATTATCGTTTTCAAAGCTGTGTTAGGCAATTTATTTTGGGCATCGTTGGGCATAAATTCCctaataatctttcagcatattgtaattcaagtggaaagagagaaaattaaACATCTGCATCTCCTCTTGGCTCggttttcaggctttagaaaagCTAGCCCGTGACGGTAGTgaaacagagaggggagagaaaaagcTGCAGGAGGAGGTCTCACTCTACTTTAAATTATTGCTGTGTACTAATgataaacactttaaaaaaaatcaaatatccttTCAAGAAGTTTCCTCTGGCTATGGGACTGAGACTACggttaacatgctaacatagTATGTTGTCAGCTAACCATTAGCATTCTGCCCAGAGAGCTAAAGTTACCATGTTGCCATTTCTGTAAACATGAATGCCAACTTCTTCACTGGACCTCAAGCCCTCTGTGGCTGTGACTATACTGAGGGAAAATAAGATAATGGTACTTCATTTCCAAAGCACATTTCAGTGTCTTATGTTGGTCACGACTGTTTCTTCAATCTTTGCCACACATTTCTGATAAATTCTGAGTTATTGGAGTCACGCAAGGCTATgacatttgtatttcttttatgactttattttaacataaaaaaatttaaaaaaagatgcgTTGACAAGTGGCATCAAAGCGTGTTGCGATTCTGGATTGGGCCATTAACAATGTTTGCGTTgatattgtgtatttttttcaaattgtgtAAAGTTCTATTCTATGTAATATAGTATTTTTCTATGACAATATTACTCTCCCGAAACatgggaggaaaacaaaacagaaatgatccaagggaaaataaaatgtatgactTGTTGTTGtcgggttttttttcttcattttctatGAAACAAAGAGTGTACTGCTATACTTCTCTTTTCGAGAAGAACAAGAGAAAAGATCAGAAGCAAGAACAATAAAATGTCTAATTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57671 lncRNA downstream 34853 30911029 ~ 30911479 (-) True G42914
TU57661 lncRNA downstream 51076 30894713 ~ 30895256 (-) True G42904
XR_005639056.1 lncRNA downstream 53686 30887485 ~ 30892646 (-) True LOC120558094
TU57657 lncRNA downstream 53711 30876295 ~ 30892621 (-) False LOC120558094
TU57658 lncRNA downstream 66556 30876295 ~ 30879776 (-) False LOC120558094
TU57736 lncRNA upstream 454998 31470645 ~ 31470849 (-) True G42973
TU57739 lncRNA upstream 541140 31556787 ~ 31556994 (-) True G42976
TU57798 lncRNA upstream 683132 31698779 ~ 31761433 (-) True G43018
XR_005638900.1 lncRNA upstream 726495 31742142 ~ 31745424 (-) True LOC120556863
TU57790 lncRNA upstream 793874 31809521 ~ 31968155 (-) True G43017
XM_039798606.1 mRNA downstream 141763 30803381 ~ 30804569 (-) True LOC120557908
XM_039797918.1 mRNA downstream 338280 30525968 ~ 30608052 (-) True rims4
XM_039796715.1 mRNA downstream 472114 30446758 ~ 30474218 (-) True ywhaba
XM_039796729.1 mRNA downstream 612581 30332033 ~ 30333751 (-) True LOC120556903
XM_039798050.1 mRNA downstream 816015 30125751 ~ 30130317 (-) True romo1
XM_039797121.1 mRNA upstream 5125 31020772 ~ 31374048 (-) True LOC120557086
XM_039797125.1 mRNA upstream 435764 31451411 ~ 31468172 (-) True LOC120557088
XM_039796307.1 mRNA upstream 544969 31560616 ~ 31562201 (-) True LOC120556662
XM_039796306.1 mRNA upstream 544970 31560617 ~ 31571781 (-) False LOC120556662
XM_039796305.1 mRNA upstream 544970 31560617 ~ 31571778 (-) False LOC120556662
TU57583 other downstream 267317 30638971 ~ 30679015 (-) False LOC120558045
TU57462 other downstream 816051 30125761 ~ 30130281 (-) False romo1
XR_005638968.1 other downstream 2196099 28741798 ~ 28750233 (-) False LOC120557442
unassigned_transcript_204 other downstream 3372605 27573656 ~ 27573727 (-) True trnap-agg_2
TU56437 other downstream 4052302 26813208 ~ 26894030 (-) False G41944
XR_005639084.1 other upstream 370954 31386601 ~ 31386657 (-) True LOC120558256
XR_005639085.1 other upstream 376929 31392576 ~ 31392632 (-) True LOC120558257
XR_005639072.1 other upstream 380615 31396262 ~ 31396318 (-) True LOC120558242
XR_005639073.1 other upstream 382549 31398196 ~ 31398252 (-) True LOC120558244
XR_005639083.1 other upstream 384429 31400076 ~ 31400132 (-) True LOC120558255

Expression Profile