RNA id: XM_039796543.1


Basic Information

Item Value
RNA id XM_039796543.1
length 2372
RNA type mRNA
GC content 0.52
exon number 8
gene id lmcd1
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 30064169 ~ 30083871 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCCAGGCCTCGTTGCTCCAGGTAGTCCTCCAGTCAGCTGAAGACCAGGCCTGAATCCAAAGCCTGGTCTGTTGCAGAAAGCCAACAGTGCAGCTGCTGTTTTCAAGACCATAAATCTCCCTGAATACTGCCAGTCTGCCGCTACATGGTCTGAGGCTGTAACATAGGAGGTACCTGTAATATTTAGCCAAGCACAGTGAATACATTGTTCAGCAAAgtcagaaagagaaacagaggtgATTGAGTGCTGCTGTTTTACTGAGGCAAAAAGTGTCGGGAGACTTATTGGTTTCCCTTCAGCGGCGTGTTGGAGCAGGAGGGGAAGAAACCGGCTGAGTTCATGTTGCAGAGGCTGCAGAAGGAGAGCCGGCAACAGGACGAGTCAAGAGGGGAgagtggagggaaaaaaaacagaacagacaACAAAAAGCAGGAGTCCACAGCttaagaggagaagaggagaaagTGGGCTGTGGAGAGCCGGCGGAGCAGAGCGGCAGCAGGAGCGTCTGTGGGCGGGGAGAGAGGAAGTGTGGTCGACAGGAGGAGGAATTTAAGCCCCCATTGTTCTGAAagagcagaggcagagagagagccgAAGAGTCAAACAGCCGACAGACGCTGGACAACATGGACGCGAGCTCAGCCATGGAGAAGATGGCTGTAAAGCAGAGTGCAGGAGGTGCAGCGGTGTGTCACGCATGTGAGGAGAGCTGCTCTGGATTCCAGCCACATTCTTGGAGGAAAGCATGTATCGCCTGCGGCTGCAGCGCGGTCGACCACGCTCCTGGAAGTGACGTGGAAGATGACCAGAGAATGGGACGCCTGCTCGCAGACTCACCCTGCTCCCATTTGACAGCGAAGGTTAAAGGAGGTGGCGGCCTTCGCATCTACAAGAGGAATCGTATGATTGTGACCAATCCTGTGGTGTCACGCAAAGACCCCACCTTCAACACCACGACGTACGTCTGGGCGCCGGCCGGCCTCAACCAGACACTGGCCATGCAGTACATGGAGCTCATCCCAGACAGTCTACGCCCCATCTCGGGGACAGATGGAGCGTTGGAGCGACGCAGGCAGCTCTTCAGTCAGCTCCCTGCCTACGATCAGGACCCCATGAAGTGTCAGAGCATTGCCAGTGAGGAGGAGATGTGTTCCATGCTGCTGTTTGTGAAGAGCTACAAACAGGAGGTGCTGGGAGTTGGGGAGGTGGCCTTACCTGGTGAGTGCGGAGCTCTGAGGGAAGCAGCCACTCAGAGGACAGCAAAGGAAGCCAAGGAACGCAGCAACATTGACAAAAAGGATGCTCTGCAGCACCAGGACCACGGCTCGACCAGCAGCAGCACTGCCTCTGCTACTGGCTCCACTAACGGAACAGATGACAGCACTAAGACTGGATATCGGTGCACTGGTTGCCAAGGTGATGTTGCCAAAGAGAGTCCAGCTGTTTATGCTGAGCGTGCAGGTTACCATAGTGCCCTGTGGCACCCAACCTGCTTCGTATGTTCAGAGTGTGGCCAGGGATTGGTGGACCTGGTCTACTTCTGGTCCAATCAGAAGCTGTTCTGCGGACGACACTACTGTCAGACGGTGTGGCCGCGGTGCTCAGGCTGCGATGAGTTGATCTTCTGTCAGTCTTTTCACACGGCAAAAGATGGACGCACGTGGCATCATCATCATTACTGAGGCTGGAACAAGACCTCCATGCACCTTGTCAGCACTAAGACACTCACACTATATAGTGTTCAACACAATATGGTGTTCAGTTTTAAGACGTTTAGCTCTAAAACAGAATTACAAGGATGggacaagacaaaataaaaacagtaaatcTAATATGGGACAGTCTccagctcacccagtaagagcgtgcgccccatgtaggctgagtcctttgcagcggcttgggttcgagtccgacctgcggccctttgctatgtgtcatcccccatcccccaatctctctcccacctttcctgtcacTATCAGATACATGGAAAAGacctaaaaaaaatctttaaatctAATATTAATCGTGGTTGGTCAGCATTTTTTATATGAATAAAAGAAAGACATAAGGCAGTGAACGTCAACTGGCCACATCCggcccgccaaagcttttagtctggcccgcagaataatcatgaattcacaaaatgtaaagagaaaaaaatgcgttctgttatttatcatttcaagcatttagagcaaaaacccagccccctgtattcACATCTCTAATCACATGCCGGGATactgtacagcgatgcccgagctccgagctccacacacacggctgagccgagatgtgtgtgcgttaaaacacacacacagctgagccgggATGTGTgcgcgttaaaacacacacacagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57415 lncRNA downstream 27280 30036382 ~ 30036889 (-) False LOC120556842
TU57416 lncRNA downstream 27363 30036382 ~ 30036806 (-) False LOC120556842
TU57405 lncRNA downstream 56730 30006081 ~ 30007439 (-) True G42692
TU57404 lncRNA downstream 58249 30002658 ~ 30005920 (-) True G42691
TU57402 lncRNA downstream 66365 29997574 ~ 29997804 (-) True G42689
TU57437 lncRNA upstream 11463 30095334 ~ 30098935 (-) True G42717
TU57467 lncRNA upstream 54472 30138343 ~ 30139513 (-) True G42743
TU57469 lncRNA upstream 112436 30196307 ~ 30204369 (-) True G42745
TU57476 lncRNA upstream 215448 30299319 ~ 30299611 (-) True G42750
TU57501 lncRNA upstream 257871 30341742 ~ 30342067 (-) True G42773
XM_039798769.1 mRNA downstream 9131 30045051 ~ 30055038 (-) True LOC120557999
XM_039798770.1 mRNA downstream 19541 30037241 ~ 30044628 (-) True rpp14
XM_039796619.1 mRNA downstream 26848 30036815 ~ 30037321 (-) True LOC120556842
XM_039796654.1 mRNA downstream 29239 30009998 ~ 30034930 (-) True pxk
XM_039796653.1 mRNA downstream 29240 30008910 ~ 30034929 (-) False pxk
XM_039798050.1 mRNA upstream 41880 30125751 ~ 30130317 (-) True romo1
XM_039796729.1 mRNA upstream 248162 30332033 ~ 30333751 (-) True LOC120556903
XM_039796715.1 mRNA upstream 362887 30446758 ~ 30474218 (-) True ywhaba
XM_039797918.1 mRNA upstream 442097 30525968 ~ 30608052 (-) True rims4
XM_039798606.1 mRNA upstream 719510 30803381 ~ 30804569 (-) True LOC120557908
XR_005638968.1 other downstream 1313936 28741798 ~ 28750233 (-) False LOC120557442
unassigned_transcript_204 other downstream 2490442 27573656 ~ 27573727 (-) True trnap-agg_2
TU56437 other downstream 3170139 26813208 ~ 26894030 (-) False G41944
TU56362 other downstream 3722977 26324917 ~ 26341192 (-) False LOC120557963
unassigned_transcript_203 other downstream 4537968 25526120 ~ 25526201 (-) True trnas-uga
TU57462 other upstream 41890 30125761 ~ 30130281 (-) False romo1
TU57583 other upstream 555100 30638971 ~ 30679015 (-) False LOC120558045
XR_005639084.1 other upstream 1302730 31386601 ~ 31386657 (-) True LOC120558256
XR_005639085.1 other upstream 1308705 31392576 ~ 31392632 (-) True LOC120558257
XR_005639072.1 other upstream 1312391 31396262 ~ 31396318 (-) True LOC120558242

Expression Profile