RNA id: XM_039798770.1


Basic Information

Item Value
RNA id XM_039798770.1
length 630
RNA type mRNA
GC content 0.54
exon number 6
gene id rpp14
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 30037241 ~ 30044628 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTGCACCTCTTTGACATATCTGGCAGCGATGACTGCGCATGCGTTGTTCTACAGGCATCCCACATGACGCCTGTTTACAACACGCCGTTATGCTTTGATGTAGTTGtCTGAAGTCAGCTAATGGGCCTGTTGGGAGTCTGAGTCACTGAGTTTTAATAGAATGAGACGCGCCGACAAGAAGGACGAACCTGCAGTTTACCAACGGGTGGTGTTGAAGAACGCCTCGCCGTACCACTACTTGAAGGTCTGCCTtgtccTGGAGGATGACTCTACCAGACTGAGTGCAGTTGAACTGAAGCAGTTCATCGTCACAGGCCTGAACAGCCTGTACGGAGAGGTGGGTGCAgcgttgacctttgacctgttgAAGTACGACGAAGACACCCTCACTGCTCTTCTGCGTGTTTACAGCAGggGTTTGGTGAAGCTGTGGAGCTCCCTGACTCTGCTGGGCTCCTACCAGAACCAGGCCTGTGCCTTCAGAGTGCTACAGGTTTCACCGTTCCTGCTCGCGCTGACGGGAAACAGTCGAGAGCTGCAGCTGGACTGAAGGAGGATGAGAATCTTCAGGACGAGTCTGACGTGGAGCGGCATCTTGAATCAACGGCGGCCGTGCCTGCCTCCTCCCT

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0008033 tRNA processing biological_process
GO:0090501 RNA phosphodiester bond hydrolysis biological_process
GO:0004540 ribonuclease activity molecular_function
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K14529 RPP14; ribonuclease P protein subunit RPP14

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57415 lncRNA downstream 352 30036382 ~ 30036889 (-) False LOC120556842
TU57416 lncRNA downstream 435 30036382 ~ 30036806 (-) False LOC120556842
TU57405 lncRNA downstream 29802 30006081 ~ 30007439 (-) True G42692
TU57404 lncRNA downstream 31321 30002658 ~ 30005920 (-) True G42691
TU57402 lncRNA downstream 39437 29997574 ~ 29997804 (-) True G42689
TU57438 lncRNA upstream 4449 30049077 ~ 30098935 (-) False G42717
TU57437 lncRNA upstream 50706 30095334 ~ 30098935 (-) True G42717
TU57467 lncRNA upstream 93715 30138343 ~ 30139513 (-) True G42743
TU57469 lncRNA upstream 151679 30196307 ~ 30204369 (-) True G42745
TU57476 lncRNA upstream 254691 30299319 ~ 30299611 (-) True G42750
XM_039796655.1 mRNA downstream 2311 30000938 ~ 30034930 (-) False pxk
XM_039796654.1 mRNA downstream 2311 30009998 ~ 30034930 (-) True pxk
XM_039796653.1 mRNA downstream 2312 30008910 ~ 30034929 (-) False pxk
XM_039796656.1 mRNA downstream 2312 30009907 ~ 30034929 (-) False pxk
XM_039796657.1 mRNA downstream 46748 29981169 ~ 29990493 (-) True pdhb
XM_039798769.1 mRNA upstream 423 30045051 ~ 30055038 (-) True LOC120557999
XM_039796543.1 mRNA upstream 19541 30064169 ~ 30083871 (-) False lmcd1
XM_039796544.1 mRNA upstream 19541 30064169 ~ 30083871 (-) False lmcd1
XM_039796542.1 mRNA upstream 19541 30064169 ~ 30083871 (-) True lmcd1
XM_039798050.1 mRNA upstream 81123 30125751 ~ 30130317 (-) True romo1
XR_005638968.1 other downstream 1287008 28741798 ~ 28750233 (-) False LOC120557442
unassigned_transcript_204 other downstream 2463514 27573656 ~ 27573727 (-) True trnap-agg_2
TU56437 other downstream 3143211 26813208 ~ 26894030 (-) False G41944
TU56362 other downstream 3696049 26324917 ~ 26341192 (-) False LOC120557963
unassigned_transcript_203 other downstream 4511040 25526120 ~ 25526201 (-) True trnas-uga
TU57462 other upstream 81133 30125761 ~ 30130281 (-) False romo1
TU57583 other upstream 594343 30638971 ~ 30679015 (-) False LOC120558045
XR_005639084.1 other upstream 1341973 31386601 ~ 31386657 (-) True LOC120558256
XR_005639085.1 other upstream 1347948 31392576 ~ 31392632 (-) True LOC120558257
XR_005639072.1 other upstream 1351634 31396262 ~ 31396318 (-) True LOC120558242

Expression Profile